Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03120 ATGGCTATTGAAATGATTGATCTCACAGACTCACCCCCATCACCACCCAAGTCACCATCTGAGGCACAAATGATCCTTAATTTTGGTGTTGTTTCTGCAGAAAATGTTCAATTCGAAAATGCTCTTATGCCCCCATGGGCTTACTTGAATCCTATTCTTCACCATACCAACCAGCACCAAACTACTCTGTCTCTGGCTCCAGGACTCACCCATGAGCCCTCTCAGAATATCACTACCTGGATCCAATCCAACATGAATGGTTATCAGGTTGCTATGATTCCTCAACCAGTACCTGAATCAAGCACATTCTTGCTTCCTCATGGTGTTAGACCTGAGGAGCCTTGGACTGAAACAGAGCATCAGTTATTTTTGGCGGGGCTAATTAAGTATGGAAAAGGACATTGGGCAAAAATTTCTAAACACTTTCTAGAGAACAAGACACCACAACAAGTTCAAAGCTATGCTGCTGGCTTTTTCAGGAACCTACCAGCCACACACTTTTTCAACTTTAGGAGAAGGAAACCTGCCAACCATTCTGCTGGTAAACTTATGGCCAGAAACGGGAACCTCATGAATGCACCTGCCTCACATTCCATGCAAAAGGTTCTTAACAGACCACAACAAACCCTCACTCTCTTCCCAGAGAAAACTCATTTTTCTCAGATTTCACCATTCGGAGAAGGTAGCAGTAGCAACAACCATATCGACGGGTTCCAGATGCTGACAGGTGGTGCAAGCACTTCCATGACAACTAGTGCTAATGGAGAAGTTGATTTGGAACTGCGCTTGGGTTGA 795 0.4453 MAIEMIDLTDSPPSPPKSPSEAQMILNFGVVSAENVQFENALMPPWAYLNPILHHTNQHQTTLSLAPGLTHEPSQNITTWIQSNMNGYQVAMIPQPVPESSTFLLPHGVRPEEPWTETEHQLFLAGLIKYGKGHWAKISKHFLENKTPQQVQSYAAGFFRNLPATHFFNFRRRKPANHSAGKLMARNGNLMNAPASHSMQKVLNRPQQTLTLFPEKTHFSQISPFGEGSSSNNHIDGFQMLTGGASTSMTTSANGEVDLELRLG. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03120 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 163 IPR017930 -
Seca12g03120 264 SMART sant 111 161 IPR001005 -
Seca12g03120 264 Gene3D - 113 163 - -
Seca12g03120 264 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g03120 264 SUPERFAMILY Homeodomain-like 114 162 IPR009057 -
Seca12g03120 264 ProSiteProfiles Myb-like domain profile. 114 159 IPR001005 -
Seca12g03120 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 159 IPR006447 GO:0003677
Seca12g03120 264 Pfam Myb-like DNA-binding domain 113 154 IPR001005 -
Seca12g03120 264 ProSiteProfiles SANT domain profile. 110 163 IPR017884 -
Seca12g03120 264 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 53 162 IPR043363 -
Seca12g03120 264 CDD SANT 114 155 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03120 Seca-Chr12 61354410 61355422 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g03120 Myb_DNA-binding 1.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03120 - - gmx:102663307 236.113