Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03108 ATGAATTTGATCACTTTTAGCGTTCCATTCCTTCTCCTCTTGCTACTGGCTGTCTGCTCCAGCTTCAACGGCCACGTTGATGCACCCACCTTGGGAATCTCCTCAATCTCCTCACGGGTCAACGGATTTTCTCGACCCTCTGCTCGTTCCCTCCTCTCTATTCCTCCTAACCCACCAACTACGGCGCTGGTTGCCGCACTAGATGGGACTATGTATTTGGTGGAAAGACATGAGAGTGGTTCCATGAGGGTGATATGGTCATTCTCAACGGGATCGCCAATCTACAGTTCATATCAAGCTTCTGTCAATAAGGATAATGGTAAAGAAAATGCATCTGCAGCACTAATTAACGGGTTTGTGGAATGCGGGGATGACTGGTCGTTGTACATGCATGACGAGCACTTTGGTAAAATGAGAATATCAGAATCTATTGCAGAATATGTAGCTCATACACCTACCTTTTCAGATGATGGAGCTATTACACTTGGATCCAAAAGAACCACTTTGTTTGAAGTTGATGCTAAAAATGGATCGATTATTCGCATCCATGCTATGTCTGATATTGATAATGCTTCTGCACCTTGGAGTAATAACAGGCAGAGTGTTGCAAATATCCTCAGTGCAAAGAATGAGGATCTTTCTGATCCTGTGAAGCTAAATTCACCGCAGCTGCTGCTCAAGATTTTTAGGACAGATTATTCTCTACAATGTGTTGGTCCCACCTCAGGAATAGTTTTGTGGACCATGAAAGTCGCTGAATTTGAGGCTGTATTATTATGCCAACATACTTCATTTGATGTAGAGGATGGGTATGCTTCTGACAGTGGTCTCAATTTTGCGATGCCATACCCATGTCAAGAGATACAGCAAGTCTTTCGCCTAAAAAAGAATTTTTTGTTAGAACCTTCTATCACTGAAAGATTACCCGAGGCTTATGGTAAAAGTGATATACTCTCAAAACCTACCTCAGATCTGATGCTTCCATTGCAGCCAAATATGGATAGATTTTTCGATGGTCATGATGGTAACATGATGCTTCCTGCCCCTATATCAAATTCTTTGCCTTCTCTGCAACATAAAACAAACTTCTATGACAGTAATGGTAATGCAGATGTGCTCCCTCAGCCTCCCATGGAGATTATGACACCAGGGGATGTTTACCTAAACCGGACAAGTAAATGGTCAACTCCGTTACTTCTTATATGGTTTATTGTCCCTCTTACGGGCTTTTCACTCTATTATTGTCTAGTGAAGGACCAAAGCAGCGAGTCTGAATTAAGAAGTTCACCTGCTAAGAAAAAGAAAACACGCAAGTCAGGTAGGAACAGTGTCACTGTTGATGAAAAGGAAAAGCATCTTTCTTCAGAAGATGAGGAACTGCTGACACAAAAGGATACTGATAAAGAAATATGGCAGAACTTTAATCAAGTTGATGTAGGTGTTGATGGGCGAAGGGTTGGTAAATTATTTGTTTCTAATAAAGAGATTGCCAAGGGAAGCAATGGTACCATTGTCCTCGAGGGGATATATGAAGGCAGAGCAGTTGCTGTCAAACGTCTAGTCAAGGCTCATCACGATGTAGCCTATAAAGAAATCCAAAACCTCATTGTGTCTGACCATCATCCAAACATTGTCCGATGGCATGGGGTGGAGTATGATCAAGATTTTGTTTACCTTGCTCTGGAACGTTGTACATGCAACTTAGGTGATTTGATTCATAATTATTCAGGTATATCAGAAAACCCCATGTTCAGGAAGGACCAAGCTTTCAAATGTTTGATAAAGGCCCAAATAGAGACAGGGAGGGATAATACACAATATCTTTGGAAATCAAACGGCTACCCGTCACCTCTATTGCTAAAACTCATGAGGGATGTTGTTTCTGGGCTTGTTCATTTACATGAACTAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTCTAATAATCAAGGAAAGATCCTTATGTGCAAAGCTTTCAGATATGGGCATTAGCAAACGGCTTCTTGAAGATATGTCTTCTTTGGGACATAATGCTACTGGTGGTGGCAGTTCAGGTTGGCAAGCACCAGAGCAGCTTGTTCAAGGACGCCAAACTCGGGCTGTTGATATATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATGACTGGCGGAAGACATCCATTTGGAGAACATCTTGAACGTGATGTCAATATCATGAAAAATAAAAAAGATCTTTTCTTAGTGAATTTCATTCCTGAAGCTGAGGATCTTATTAATAGTTTGTTAAATCCTAACCCTAATCTAAGGCCAAAGGCGATTGAAGTACTGAACCATCCTTTTTTCTGGAGTTCCGACATGAGACTTTCATTTTTACGTGACACCAGTGATAGGGTGGAACTGGAAGATAGAGAGATTGGTTCTGATCTTTTGAGGGGGATAGAAAACATTGCCACAGTGGCCTTAGGTGGAAAATGGAATGAAAGGATGGAACCAGCTTTCATTGCTAACATTGGTCATTACCGGCGATATAAGTTTAACAGTGTTCGAGACTTGTTGCGGGTTATGAGAAACAAGCTAAATCATTATAGAGAACTTCCTCAAGAAATCCAGGAACTTGTAGGACCTGTTCCTGAAGGATTCAATGACTACTTTGCAAGTCGATTCCCAAGACTCTTGATTGAAGTGTATAAAGTTATGTGCAAATATTGCAAGGAGGAAGAAGGTTTTCAAAGATATTTTATTAAGGTTGTTTAG 2739 0.4089 MNLITFSVPFLLLLLLAVCSSFNGHVDAPTLGISSISSRVNGFSRPSARSLLSIPPNPPTTALVAALDGTMYLVERHESGSMRVIWSFSTGSPIYSSYQASVNKDNGKENASAALINGFVECGDDWSLYMHDEHFGKMRISESIAEYVAHTPTFSDDGAITLGSKRTTLFEVDAKNGSIIRIHAMSDIDNASAPWSNNRQSVANILSAKNEDLSDPVKLNSPQLLLKIFRTDYSLQCVGPTSGIVLWTMKVAEFEAVLLCQHTSFDVEDGYASDSGLNFAMPYPCQEIQQVFRLKKNFLLEPSITERLPEAYGKSDILSKPTSDLMLPLQPNMDRFFDGHDGNMMLPAPISNSLPSLQHKTNFYDSNGNADVLPQPPMEIMTPGDVYLNRTSKWSTPLLLIWFIVPLTGFSLYYCLVKDQSSESELRSSPAKKKKTRKSGRNSVTVDEKEKHLSSEDEELLTQKDTDKEIWQNFNQVDVGVDGRRVGKLFVSNKEIAKGSNGTIVLEGIYEGRAVAVKRLVKAHHDVAYKEIQNLIVSDHHPNIVRWHGVEYDQDFVYLALERCTCNLGDLIHNYSGISENPMFRKDQAFKCLIKAQIETGRDNTQYLWKSNGYPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLLEDMSSLGHNATGGGSSGWQAPEQLVQGRQTRAVDIFSLGCVLFFCMTGGRHPFGEHLERDVNIMKNKKDLFLVNFIPEAEDLINSLLNPNPNLRPKAIEVLNHPFFWSSDMRLSFLRDTSDRVELEDREIGSDLLRGIENIATVALGGKWNERMEPAFIANIGHYRRYKFNSVRDLLRVMRNKLNHYRELPQEIQELVGPVPEGFNDYFASRFPRLLIEVYKVMCKYCKEEEGFQRYFIKVV. 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03108 912 ProSiteProfiles Protein kinase domain profile. 490 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03108 912 ProSiteProfiles KEN domain profile. 779 910 IPR010513 GO:0004540|GO:0006397
Seca12g03108 912 SUPERFAMILY Protein kinase-like (PK-like) 484 788 IPR011009 -
Seca12g03108 912 Gene3D Phosphorylase Kinase; domain 1 477 562 - -
Seca12g03108 912 CDD RNase_Ire1 781 908 - -
Seca12g03108 912 Pfam Protein kinase domain 492 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03108 912 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 780 912 - -
Seca12g03108 912 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 601 778 - -
Seca12g03108 912 Gene3D - 54 275 IPR015943 GO:0005515
Seca12g03108 912 PANTHER IRE1-RELATED 139 908 IPR045133 GO:0004521|GO:0004674|GO:0030968
Seca12g03108 912 Gene3D Transferase(Phosphotransferase) domain 1 602 778 - -
Seca12g03108 912 SMART serkin_6 490 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03108 912 MobiDBLite consensus disorder prediction 440 460 - -
Seca12g03108 912 SMART PGNneu 841 895 - -
Seca12g03108 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Seca12g03108 912 FunFam Inositol requiring 1-1 44 266 - -
Seca12g03108 912 MobiDBLite consensus disorder prediction 425 460 - -
Seca12g03108 912 Gene3D KEN domain 780 911 IPR038357 -
Seca12g03108 912 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 482 562 - -
Seca12g03108 912 Pfam Ribonuclease 2-5A 782 908 IPR010513 GO:0004540|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03108 Seca-Chr12 60852415 60868689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03108 471 775 MAP Kinase Kinase Kinase AT3G06030 23.625 9.01e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Seca12g03108 Pkinase 5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03108 K08852 - gmx:100788389 1329.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03108 12 60852415 60868689 Seca12g03108 12 60852415 60868689 ECH