Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03107 ATGATTAGAGTTTGGCTCGTGGTGTTGATTGTTCTCTCCAATGGGTTCTCTTCAATTGGGGTTGGCGTGGATAATTCCACAGTACCTGCTTTTGTAAATATTGGGGTTCTCTACTCTTTCAATACTAGTGTCGGTAGAATTGTAAAAATTGCTATAGAAGCTGCTGTTCAAGATGTAAATTCTGATCCATCTATTCTTGGTAAAACTAAGTTGAAGGTCTCACTGCAAGAAGATTCCAAGTACAGAGGTTTTTTGAGCATTGCTGAGGCCTTGCAACTCATGGCAACACAAACTGTGGCCATAATTGGACCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAGCTCCAAGTGCCTCTGCTATCATTTTCAGCCACTGACCCTACCCTTTCTTCACTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACATTTTTCAAATGACTGCAATAGCAGACCTTGTTAAATTCTATGGGTGGAGAGAGGTTATTGCAGTCTATGGTGATGATGACCATGGAAGGAATGGAATAGGTGCCTTAGGGGATAAGCTTGCTGAGAGACGTTGCAAGATCTCATTTAAAGCACCAATGACTCCTGAGGCAACTAGGGAGGAGATTACTGATGTGCTTGTTCAGGTGGCCCTGGCAGAATCCCGGGTTATAGTTCTTCATACAAGTACTGCTTGGGGTCCAAAAGTGTTGAGTGTGGCAAAGTCTCTTGGGATGATGGAAAATGGTTATGTCTGGATTGCCACTAATTTTCTGACTAGTTGGTTGGACATAGATAGTCCCCTCCCTTCAGATACAATGGATAACATTCAAGGAGTTGTTACATTACGTATGTACATACCAGATTCAAAGCTCAAAAGACAGTTTGTTTCTAGGTGGAAAAACTTGACTGATGGAAAGACAGCTAATGGTTCCCTTGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTATGTGCTTGCTCGTGCACTTGATTCATTTTTCAAGCAAGGGAACCAAATCACATTTTCACATGATTCAAAGTTATCTGAACTACATGGAGACAACATGCATCTTGATGCTGTGAAAATCTTCAATGAAGGAAATCTGTTGAGGAAAAGTATTTATGAGGTTAACATGACTGGTGTATCAGGTCAATTTAAGTATACATCTGATGGAAACCTTGCTAATCCAGCATATGAAATCATCAATGTGATTGGAACAGGAACTAGGAGGATTGGTTATTGGTCTAATCACTCTGGATTATCAGTTGTTACTCCAGAAGCACTTTATTCAAAATCACCTAATCATTCCACTCCAAGTCAAAAACTACTCACTGTGTTTTGGCCAGGGGAAACAACCCAGAGGCCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTACCAAAAAGGGTTAGTTACCGTGAATTTGTCACTCAAGTACAAGCCACTGATATGTTCAAGGGATTCTGCATTGATGTATTTGTTTCTGCAGTAAACTTGTTGCCCTATGCTGTCCCCTATAAATTTGTTTCATATGGGGATGGTAACAGCAATCCTAGTAACACTGAGCTTGTGCGTATGATCACAACGGGCGTCTTTGATGCTGCAGTAGGTGACATCACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTTGTAGCATCAGTTAAGAAGATAGAATCCAATGCTTGGGCATTTTTGATGCCATTTACACCAATGATGTGGACTGTCACAGCCATCTTTTTCCTACTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGAGTTTAGGGGACCTCCCAAAAGACAAGTAGTCACAATTTTGTGGTTTAGTTTTTCAACTATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGCTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCAAGCCTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGAAAGTTTAATAAATAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCTTTTACTCGAACTTATTTAATTGAGGAAATTGGTATTGATGAATCCAGATTAGTTCCTCTAAAAACACCAGAAGAAACTACAAAAGCACTGGAAAAAGGTCCTCAAAAGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTATACTATTGTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCTCCATTAGCAGTTGATCTTTCAACTGCCATTTTGGAGTTGGCAGAAAATGGAGATTTGCAAAGAATCCATGACAAATGGCTTTTGAGCAGGGCTTGCCTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAATCTCAAAAGCTTTTGGGGCCTCTATTTAGTCTGTGGGTTGGCATGTTCACTTGCTCTCTTGATATATCTTATTCAGACACTGAGACAATACAACAAGCACCGCCCAGAAGAAGTTGAGTCTCCTGGCCAAGGCTCAGGATCTTCACGTTTGCGGACTTTTCTTTCATTTGTAGATGAAAAGGAAGAGATAGTTAAGAGCCGCTCCAAGAGAAGGCAAATGGAAAGGATATCATATAGAAGCACAAGTGAAGTTGGATCATCCATCACATTCAATAGAGGATTTTCCCAGTCATCATCATCAAACAAAATTGATTCAGCTAATGAAGTTTGA 2820 0.4046 MIRVWLVVLIVLSNGFSSIGVGVDNSTVPAFVNIGVLYSFNTSVGRIVKIAIEAAVQDVNSDPSILGKTKLKVSLQEDSKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTAFSDIFQMTAIADLVKFYGWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWIATNFLTSWLDIDSPLPSDTMDNIQGVVTLRMYIPDSKLKRQFVSRWKNLTDGKTANGSLGLSTYGIFAYDTVYVLARALDSFFKQGNQITFSHDSKLSELHGDNMHLDAVKIFNEGNLLRKSIYEVNMTGVSGQFKYTSDGNLANPAYEIINVIGTGTRRIGYWSNHSGLSVVTPEALYSKSPNHSTPSQKLLTVFWPGETTQRPRGWVFPNNGRMLKIGVPKRVSYREFVTQVQATDMFKGFCIDVFVSAVNLLPYAVPYKFVSYGDGNSNPSNTELVRMITTGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKIESNAWAFLMPFTPMMWTVTAIFFLLVGAVVWILEHRLNDEFRGPPKRQVVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLINSKEPIGYLQGSFTRTYLIEEIGIDESRLVPLKTPEETTKALEKGPQKGGVAAYVDERAYIELFLSSRCDYTIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSRACLSQGAKLEVDRLNLKSFWGLYLVCGLACSLALLIYLIQTLRQYNKHRPEEVESPGQGSGSSRLRTFLSFVDEKEEIVKSRSKRRQMERISYRSTSEVGSSITFNRGFSQSSSSNKIDSANEV. 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03107 939 Pfam Bacterial extracellular solute-binding proteins, family 3 527 812 IPR001638 -
Seca12g03107 939 Gene3D - 467 582 - -
Seca12g03107 939 SUPERFAMILY Periplasmic binding protein-like I 29 464 IPR028082 -
Seca12g03107 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 889 IPR015683 -
Seca12g03107 939 CDD GluR_Plant 470 812 - -
Seca12g03107 939 FunFam Glutamate receptor 467 583 - -
Seca12g03107 939 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Seca12g03107 939 FunFam Glutamate receptor 148 303 - -
Seca12g03107 939 MobiDBLite consensus disorder prediction 919 939 - -
Seca12g03107 939 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Seca12g03107 939 Gene3D - 782 812 - -
Seca12g03107 939 Gene3D - 50 400 - -
Seca12g03107 939 Gene3D - 148 425 - -
Seca12g03107 939 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Seca12g03107 939 FunFam Glutamate receptor 709 816 - -
Seca12g03107 939 PIRSF IGluLR_plant 1 938 IPR017103 -
Seca12g03107 939 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Seca12g03107 939 Gene3D - 741 781 - -
Seca12g03107 939 Gene3D - 583 711 - -
Seca12g03107 939 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Seca12g03107 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Seca12g03107 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Seca12g03107 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Seca12g03107 939 FunFam Glutamate receptor 583 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03107 Seca-Chr12 60846914 60852364 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03107 5 914 Ion Channels AT3G51480 60.460 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03107 K05387 - gmx:100788917 1649.8