Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03104 ATGAGATGCAAGTACCTCTACTATCATTTGCAGCAACAGACCCTGACGTCACTGCAGTTCCCATATTTTGTTAGGACAACACAGAGTGATCTGTATCAGATGGCTGCTGTGGCAGAAATCGTTGACCACTTTCAATGGAGAGATGTAATATCAATTTTCATTGATGATGATCATGGAAGAAATGGGGTAGCTGCATTAGGGGATAAGCTAGCAGAGAAACGTTGCAAAATATCATATAAAGCACCCATAAGGCCAGATAACAATATTAGTCATGAAGAAATAAACAGTGCATTAGTTAAGATAGCTTTAATGGAGTCTAGGGTAATAGTCCTTCACATATTCCCTAGTGTTGGTCTAGATGTACTTCATGTGGCTCAGTCACTTGGCATGATGGGAAGTGGTTATGTATGGATAGCCACGGATTGGCTTTCTACAGTTCTAGATTCATACCCTTCCTTGACCACATCTCCAGCCATGAATGACATCCAAGGTGTTATCACCTTGCGCATGTATACCCCAGATTCAGAAATCAAAAAAGAATTTTTTTCTAGGTGGAACAACCTGAGTCATAAGAAAGATCCTAATCACAGCCCTTTTGGGTTAAACACCTTTGGTCTATACGCCTATGACACTGTTTGGGTTCTTGCTTATGCACTTGATGCATTATTAAGCAATGGGGGGACCTTGTCATTTACTAATGATTCAAGTCTAAACATGTTAAGGGGGGACAACCTTCATTTGGATTCTATGGGGGTCTTTGCTAATGGTAGCACGTTGCTTCAAAAAATTTTAGAGGTTAACAGAACAGGTTTAACAGGCCAAATGATGTTTGATTCAGATGGAAATTTAAGGCATCCATCATATGAAATCATTAATGTGATAGGCACTGGAATTAGAAGAATTGGTTATTGGTCTGATTCCTCTGGCCTACACACTGGGGAAGCTCCTAATCATTCCAATTCCAGTGAAGGACTATATAGTGTTATTTGGCCAGGTCAAACAACTCAAACACCTCGTGGTTGGGTTTTTGCCAGCAATGGAAAACACTTGAGAATTGGAGTGCCACTTAGAATTAGTTACCGTGAATTTGTGTCAAGAATCGAGGGCTCTGAAATGTTTACTGGTTATTGCATAGATGTGTTTACTGCTGCACTGAATTTGTTGCCTTATCCAGTTCCATTCAAATTTATTCCATTTGGTGATGGTAAAACCAACCCATTAAATTCAGACCTTCTCCACATGATCACAGTTGGTGCCTTCGATGCTGTGGTGGGGGACATTACTATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCAGGGCTAGTGGTTGTGGCACCTATTAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTCACACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCCTAGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGTGTAAATGATGACTTTAGAGGTCCTGCTAGAAGACAGTTTGTCACCATTATCTGGTTTAGCTTTTCAACCCTATTTTTTGCACATAGAGAGAAAACTGTGAGCACCCTTGGTCGTTTGGTGCTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTTACCTCCATCCTTACTGTGGAACAGCTCTCTTCCCCTGTTAAGGGAATTGAAAGCTTAGTAATAAGCAACGACCGCATTGGTTACCTGAGGGGTTCATTTGCTGAAAATTCTCTGACTGAGGAGCTCAACATACACAGATCCAGGCTTGTTCCTCTCAACTCCCCATCAGAATATGAAAAAGCCTTGAAGGATGGCCCTGCTAATGGAGGTGTTACTGCAATAATAGATGAGCGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATTTGGTATTGTTGATCAAGAGTTCACCAAGATGGGATGGGGTTTTGTAAGTACAAATCCATTTCTTTTCCATAATAAACAGCTACACATATTCCAAATTGGGAGTTCTAAGTACTAA 2043 0.4092 MRCKYLYYHLQQQTLTSLQFPYFVRTTQSDLYQMAAVAEIVDHFQWRDVISIFIDDDHGRNGVAALGDKLAEKRCKISYKAPIRPDNNISHEEINSALVKIALMESRVIVLHIFPSVGLDVLHVAQSLGMMGSGYVWIATDWLSTVLDSYPSLTTSPAMNDIQGVITLRMYTPDSEIKKEFFSRWNNLSHKKDPNHSPFGLNTFGLYAYDTVWVLAYALDALLSNGGTLSFTNDSSLNMLRGDNLHLDSMGVFANGSTLLQKILEVNRTGLTGQMMFDSDGNLRHPSYEIINVIGTGIRRIGYWSDSSGLHTGEAPNHSNSSEGLYSVIWPGQTTQTPRGWVFASNGKHLRIGVPLRISYREFVSRIEGSEMFTGYCIDVFTAALNLLPYPVPFKFIPFGDGKTNPLNSDLLHMITVGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFTPMMWFVTGMFFLVVGAVVWILERRVNDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVISNDRIGYLRGSFAENSLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLATRCEFGIVDQEFTKMGWGFVSTNPFLFHNKQLHIFQIGSSKY. 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03104 680 PRINTS Metabotropic glutamate GPCR signature 49 66 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca12g03104 680 PRINTS Metabotropic glutamate GPCR signature 14 33 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca12g03104 680 PRINTS Metabotropic glutamate GPCR signature 33 49 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca12g03104 680 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 658 IPR015683 -
Seca12g03104 680 FunFam Glutamate receptor 461 591 - -
Seca12g03104 680 Pfam Ligand-gated ion channel 472 575 IPR001320 GO:0015276|GO:0016020
Seca12g03104 680 Gene3D - 32 200 - -
Seca12g03104 680 SUPERFAMILY Periplasmic binding protein-like I 17 341 IPR028082 -
Seca12g03104 680 Gene3D - 232 350 - -
Seca12g03104 680 SMART GluR_14 351 677 IPR001320 GO:0015276|GO:0016020
Seca12g03104 680 FunFam Glutamate receptor 29 188 - -
Seca12g03104 680 Gene3D - 351 460 - -
Seca12g03104 680 Pfam Receptor family ligand binding region 12 295 IPR001828 -
Seca12g03104 680 SUPERFAMILY Periplasmic binding protein-like II 326 658 - -
Seca12g03104 680 Pfam Bacterial extracellular solute-binding proteins, family 3 371 635 IPR001638 -
Seca12g03104 680 Gene3D - 461 598 - -
Seca12g03104 680 FunFam Glutamate receptor 345 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03104 Seca-Chr12 60722185 60725095 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03104 1 658 Ion Channels AT1G42540 60.180 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03104 K05387 - gmx:100789442 1158.67