Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03101 ATGTTAAGGGGGGACAACTTTCATTTGGATTCTATGAGGGTCTTTTTGAATGGTAGCATGTTGCGTCAGAAAATTTTAGAGGTTAACAGAACAGGATTAGCAGGGCAAATGATGTTTGGTTCAGATGGAAACTTAATGCATCCATCATATGAAGTCATTAATGTGATAGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGATTCCTCTGGCCTACACACAGGGGAAGCTCCTAATCATTCCAATTCCAGTGAAGGACTATTTGGTGTCATCTGGCCTGGTCAAACAACTCAAACCCCTCGTGGTTGGGTTTTTTCCAGCAGTGGAAGATCCTTGAAAATTGGGGTGTCACTTAGAATTAGTTACCGTGAATTTGTGTCAAGATCTGAAAGCACTGAAATGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCAAGGGACTTGTTGCCTTATCCAGTTCCATACAAGTTTATTCCATTTGGTGATGGTAAAACTAACCCATTAAATACAGAACTTCTCCATAGGATCACAATTGGTGAGTTTGATGCTGTGGTGGGGGACATTACCATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAATCTGGGCTAGTTGTTGTGGCACCTATAAGGAAATTGAAATCAAGCCCTTGGGCTTTCCTTAGACCATTTACTCCAATGATGTGGTTTGTCACAGGAATGTGTTTCTTGGCTGTGGGAGCTGTTGTGTGGATTTTAGAACGTCGCCTAAATGATGACTTTAGAGGCCCAGCTAGAAGGCAGTTTGTAACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTACACATAGAGAGAAAACTGTGAGCACCCTTGGTCGCTTAGTACTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTTACCTCCATCCTTACTGTGGAACAGCTCTCTTCCCAAGTTAAGGGAATTGAGAGCTTAGCAACAAGCAATGACCGTATTGGTTACTTGAGGGGTTCATTTGCTGAAAATTATCTGACTGAGGAGCTCAACATACACAGATCCAGGCTTGTTCCTCTTAACTCCCCATCAGAATATGAAAAAGCCTTGAAGGATGGCCCTGCTAATGGTGGTGTTACAGCAATAATAGATGAACGTGCATACATGGAGCTATTCCTATCTACCAGATGTGAATTTGGTATTGTTGGTCAAGAGTTCACCAAGATGGGATGGGGCTTTGCTTTCCCAAGGGACTCTCCCTTAGCAATTGACATGTCAACTGCCATTCTAAAACTATCAGAAAATGGTGACCTTTAG 1335 0.4165 MLRGDNFHLDSMRVFLNGSMLRQKILEVNRTGLAGQMMFGSDGNLMHPSYEVINVIGTGIRRIGYWSDSSGLHTGEAPNHSNSSEGLFGVIWPGQTTQTPRGWVFSSSGRSLKIGVSLRISYREFVSRSESTEMFGGYCIDVFTAARDLLPYPVPYKFIPFGDGKTNPLNTELLHRITIGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKLKSSPWAFLRPFTPMMWFVTGMCFLAVGAVVWILERRLNDDFRGPARRQFVTIIWFSFSTLFFTHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSQVKGIESLATSNDRIGYLRGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLSTRCEFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDL. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03101 444 Pfam Ligand-gated ion channel 234 337 IPR001320 GO:0015276|GO:0016020
Seca12g03101 444 CDD GluR_Plant 112 444 - -
Seca12g03101 444 SUPERFAMILY Periplasmic binding protein-like I 15 103 IPR028082 -
Seca12g03101 444 FunFam Glutamate receptor 107 223 - -
Seca12g03101 444 SUPERFAMILY Periplasmic binding protein-like II 87 443 - -
Seca12g03101 444 Gene3D - 48 72 - -
Seca12g03101 444 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 443 IPR015683 -
Seca12g03101 444 Gene3D - 222 361 - -
Seca12g03101 444 Gene3D - 106 221 - -
Seca12g03101 444 Pfam Receptor family ligand binding region 7 57 IPR001828 -
Seca12g03101 444 Gene3D - 6 47 - -
Seca12g03101 444 FunFam Glutamate receptor 223 353 - -
Seca12g03101 444 SMART GluR_14 113 444 IPR001320 GO:0015276|GO:0016020
Seca12g03101 444 FunFam Glutamate receptor 349 444 - -
Seca12g03101 444 Pfam Bacterial extracellular solute-binding proteins, family 3 123 443 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03101 Seca-Chr12 60649680 60653197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03101 3 444 Ion Channels AT1G42540 65.632 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03101 K05387 - gmx:100790502 806.979