LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g03099	ATGAGCAATGATGTTGATTCTAGTGATAGTGGAGATAGTGGTAGTGAGCCTACTACTAATAATGAAACAAATGAGCCATTAATGATGGATGTTGGAAGTGAGGTCTTTAAGAGGGTAACAGATTTGACTCCTGATGATATACTAGTGTTACAGTTTGGTTCTCAAAAGGAAGCATATGTATTTTACAATGAATATGCTAAAACTCATGGATTTGTTGTAAGGAAAGATGAGGTAAAGAAGGATGTTAGGGGGAACATTGTGATGCGGCAATTTGTATGCAATAGGGAAGGACTAAGAAATAAAAAACATTTAATGAGATTAGATAGAAAAAGGGAGCATAGAGCACTTACCCGCACAAATTGTGTAGCAAAGCTTCGAATTCGCTTTAATCGAAAGAAATCCAAATGGAGAGTGGTCTCCTTTGTGGAGGCCCATAACCATGAGTTAACTACTTCTAGGTATGTGCATTTACACTCTGCTTATCGTAAGTTGTCAGATGGAGATAAGGCTCGGGTAGATAACTTACATACACATGGTGTGAGAACATGTCGCATTATGGGGTATATGTTGGCTCAGAAGGGGGGATACAGTAATCTTGGTTTTTCAAGAAAGGATGTGTACAACTATATTGATAGTAAGGCTCGTGGTAAGATAAAGGATGGAGATGCACTTGCTGCCCTTAGTTATTAG	690	0.3841	MSNDVDSSDSGDSGSEPTTNNETNEPLMMDVGSEVFKRVTDLTPDDILVLQFGSQKEAYVFYNEYAKTHGFVVRKDEVKKDVRGNIVMRQFVCNREGLRNKKHLMRLDRKREHRALTRTNCVAKLRIRFNRKKSKWRVVSFVEAHNHELTTSRYVHLHSAYRKLSDGDKARVDNLHTHGVRTCRIMGYMLAQKGGYSNLGFSRKDVYNYIDSKARGKIKDGDALAALSY.	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g03099	229	PANTHER	OS01G0519700 PROTEIN	50	229	-	-
	Seca12g03099	229	MobiDBLite	consensus disorder prediction	1	27	-	-
	Seca12g03099	229	Pfam	FAR1 DNA-binding domain	61	150	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g03099	Seca-Chr12	60608010	60608699	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca12g03099		FAR1	3.5e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g03099	-		-	ccaj:109792835	276.174