Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03096 ATGTTGACTGGTTTGGATTACTTGCATAGAGAACATGGTATTATCCACACAGACCTGAAACCAGAAAATGTTCTTCTGGTTTCTACCATTGACCCTGCAAAAGACCCTGTGGTAGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGTCTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGTATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACTCCCAAGGTTGGACAAGGTTTTAGTGAAGATGAGGTATGA 321 0.4112 MLTGLDYLHREHGIIHTDLKPENVLLVSTIDPAKDPVVDFGNACWADKQFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEV. 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03096 106 Pfam Protein kinase domain 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03096 106 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03096 106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 14 26 IPR008271 GO:0004672|GO:0006468
Seca12g03096 106 Gene3D Transferase(Phosphotransferase) domain 1 1 104 - -
Seca12g03096 106 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 1 36 - -
Seca12g03096 106 SUPERFAMILY Protein kinase-like (PK-like) 1 97 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03096 Seca-Chr12 60519683 60520210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03096 1 35 EF-hand Containing Proteins AT5G22840 74.286 4.04e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Seca12g03096 Pkinase 2.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03096 K08832 - gmx:100811724 144.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03096 12 60519683 60520210 Seca12g03096 12 60519683 60520210 ECH