Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03082 ATGCCGAAGGTCAAAGCTGACACCAAACCCGCTGATAACCGCTTGAAGCGTAAGGGCGCTGGAGCCGGAAGGAAGCAGACGAAGAAAGCCGCGAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCAAACAACAAATCTGTCGCCGTTGTCGGGAAAGCTGGCGGTGAGAAATGGAAATCACTGTCTGATGCTGTGAGTATGCAATTTTATTGGTTGATGCTTGGTTTTGACGCTATCATGGAATTTATTTTTGATTTAATTAAATATTTGCATCTTAATTTCATCTTTCAGGAGAAGGCTCCCTATGTTGCTAAGGCAGAGAAGAAGAAAGAAGAGTATGAAAAAAGTATTCAGGCCTACAACAGGAAAAAGGATGGTGAGGAGGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGAGGATGAAGAGGAGGAGGAAGATGATGATGAAGATGATGATGAGTAA 519 0.4355 MPKVKADTKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGEKWKSLSDAVSMQFYWLMLGFDAIMEFIFDLIKYLHLNFIFQEKAPYVAKAEKKKEEYEKSIQAYNRKKDGEEESDKSKSEVNDEDEEEEEDDDEDDDE. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03082 172 Gene3D High mobility group box domain 23 142 IPR036910 -
Seca12g03082 172 MobiDBLite consensus disorder prediction 152 172 - -
Seca12g03082 172 SMART hmgende2 36 140 IPR009071 -
Seca12g03082 172 Pfam HMG (high mobility group) box 37 87 IPR009071 -
Seca12g03082 172 MobiDBLite consensus disorder prediction 137 151 - -
Seca12g03082 172 MobiDBLite consensus disorder prediction 1 41 - -
Seca12g03082 172 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 139 IPR009071 -
Seca12g03082 172 MobiDBLite consensus disorder prediction 1 19 - -
Seca12g03082 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 167 IPR031061 -
Seca12g03082 172 CDD HMG-box_AtHMGB1-like 38 82 - -
Seca12g03082 172 MobiDBLite consensus disorder prediction 137 172 - -
Seca12g03082 172 Coils Coil 121 148 - -
Seca12g03082 172 SUPERFAMILY HMG-box 24 83 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03082 Seca-Chr12 60363695 60365473 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca12g03082 HMG_box 5.6e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03082 K25507 - gmx:100499992 165.236