Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03078 ATGGGTCTCTGCTTATCCTCTCTCTTTCCCTCTGCACCTGATCACTCGTCTTCCCTCAACAAGCCTCAATACTCAGGCAAGTTTTCCATTACCCGTTTTGATGGGTTTCTTTCTTTTTTTGCAGGTTCAGCGTCAGCGAGCACTGATAGTAAGAACGTGGGGTTCTCAGGGACGACGAGCAGCGCAGGAAGGAGCCAATTTTCAGAGCTTGCGAGTGGAAGCTTTGGCGGTGGTGAAGGGCCTTTTCCTCTTCCTTCTCCAAATGGCCAGATTCTGGAAAGGCCAAACATGAAGGTGTTCAGTTATGCAGACCTCAAATCTGCCACCAAGAGCTTCAAATCCGATACATTGCTCGGTGAAGGTGGTTTTGGAAGAGTTTACAAAGGGTGGTTGGATGAGAAGACCCTCACACCCGCCAGAGCAGGCTCTGGTATGGTCGTTGCCATCAAAAAATTGAACCCCGAAAGCACGCAAGGATTTCAAGAATGGCAGGCGAGTTCAATTTCAACTCTTTTCTTTTTTCATTTATTTACTAGTTTGGTGCTTACTTTTTGTATCTGCTATCTGATTTTTTTTATATGTTTTTTTTCTGTTGATTGGACGATGCAGTCAGAAATCAACTTTTTGGGAAGGCTTTCTCACCCCAACCTGGTCAAGCTATTGGGTTATTGTTGGGATGATGAGGAGCTTCTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGAATTAAAATAGCTATTGGTGCAGCTCGGGGCCTGGCTTTCTTGCACACTTCTGAAAAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTACTCGATGGGAATTACAATGCAAAAATCTCAGATTTTGGCTTGGCTAAATTGGGGCCTTCTGGGGGAGAATCACATGTAACTACTAGGGTCATGGGCACGTATGGTTATGCTGCTCCAGAATACATTGCAACAGGGCACTTGTATGTAAAGAGTGATGTGTACGGCTTTGGTGTAGTGCTGCTTGAAATTCTGACAGGCATGAGGGCACTGGATACAAAGAGGCCAACAGGGCAGCAAAACTTGGTTGAATGGTTGAAGCCTTGTCTCTCCAACAAGAAAAAGTTGAAAACCATCATGGATGCTAGGATAGAGGGTCAATATTCACCCAAGGCAGCATTGCAAGCAGCACAGCTTACACTGAAATGCCTAGAACCTGACCCTAAACAACGTCCTTCTATGAAAGAGGTGCTTGAGGCGTTGGAAGGGATTGAAGCTATTAAGGTCAAACCCAAGGAATCTAAGAACCTCAATTCCCATCAACCTCAACTTCATGCTAGGCAGAGAGTTGTGAAAGTATAG 1395 0.4466 MGLCLSSLFPSAPDHSSSLNKPQYSGKFSITRFDGFLSFFAGSASASTDSKNVGFSGTTSSAGRSQFSELASGSFGGGEGPFPLPSPNGQILERPNMKVFSYADLKSATKSFKSDTLLGEGGFGRVYKGWLDEKTLTPARAGSGMVVAIKKLNPESTQGFQEWQASSISTLFFFHLFTSLVLTFCICYLIFFICFFSVDWTMQSEINFLGRLSHPNLVKLLGYCWDDEELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGESHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTKRPTGQQNLVEWLKPCLSNKKKLKTIMDARIEGQYSPKAALQAAQLTLKCLEPDPKQRPSMKEVLEALEGIEAIKVKPKESKNLNSHQPQLHARQRVVKV. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03078 464 SUPERFAMILY Protein kinase-like (PK-like) 89 433 IPR011009 -
Seca12g03078 464 Pfam Protein kinase domain 201 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g03078 464 PANTHER OS01G0588500 PROTEIN-RELATED 55 435 - -
Seca12g03078 464 Gene3D Phosphorylase Kinase; domain 1 85 180 - -
Seca12g03078 464 Gene3D Phosphorylase Kinase; domain 1 197 237 - -
Seca12g03078 464 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g03078 464 ProSitePatterns Protein kinases ATP-binding region signature. 118 151 IPR017441 GO:0005524
Seca12g03078 464 FunFam Serine/threonine-protein kinase PBS1 237 451 - -
Seca12g03078 464 CDD STKc_IRAK 118 435 - -
Seca12g03078 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Seca12g03078 464 MobiDBLite consensus disorder prediction 443 464 - -
Seca12g03078 464 Gene3D Transferase(Phosphotransferase) domain 1 238 458 - -
Seca12g03078 464 ProSiteProfiles Protein kinase domain profile. 112 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03078 Seca-Chr12 60214489 60218608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03078 98 432 Glycoside Hydrolase AT3G07070 46.588 1.85e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca12g03078 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03078 - - gmx:100794193 646.351