Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03058 ATGGCTATTTCTGATGAGAACAATTCCAACTCTGTCGTGCCCAGAAACTTCCAAGGAGGTTTGAATCAAATGGGTGACAGAATGGTTGGGCAGAACAGAAGAACTTTGAGCGTCATTAATCGGAATCTTGTTCAAGGTCGATCGTACCCTTACGTTGTTAACAAGAGGGCGTTGTCTGAAAAACATGAGGTTTCTGAAAAGAAGCAAGCAGATCCTGTGCATCGACCAATCACAAGGAGGTTTGCTGCACAAATTGCTAGCTCGCAGCAATCTTGTGCTGAGAAAACAAAGGCAAATGACTCAAACTCATCAAATCCGAATGGGTTTGGAAGCTCTATATACATCGATGGTGTACAAAAGTCACCAGCAGATGATGTACAAAAATCACCAGCAGATGAACCAGTGCCCATGGCTCTAGAGCCAACTGAACCAATGCATAGTGATTCAGATCAGATGGAAGAAGTTGAGATGGAGGATATAAGTGAAGAACCTATCTTGGACATCGATAGCTATGATGTGAATAATCCTCTTGCAGTGGTGGAATATATTGAAGATATTCATTGTTTCTACAGAAAAGTTGAGGGTTTTAGCTGTGTTCCACCCAATTATATGGAACAACAATCTGACATTCATGAAAGGATGAGGGCTATACTGATTGACTGGCTTATTGAGGTGCATGACAAATTTGAACTTGTGCAAGAGACACTGTTTCTTACAGTTAATCTCATAGATAGATTCTTGGCAAAGCAAACAGTGGTGAGAAAGAAGCTTCAGCTGGTTGGTCTAGTTGCCATGCTTTTGGCATGCAAGTATGAGGAAGTTTGTGTTCCTGTGGTTGAGGATCTAATCCATATATCTGACAAAGCATACACAAGGAAGGAAATTCTGGATATGGAGAAGTTGATGCTCAACACTTTGCAGTTTAACATGTCTGTTCCAACAGCATATGTTTTCATCAGAAGGTTTCTGAAGGCAGCTCAAGCAGACAAAAAACTTGAGCTGCTAGCTTTTTTCTTGGTAGAGCTGTCTCTGGTGGAATATGAGATGCTGAAGTTCCCACCATCTATGCTAGCTGCAGCTGCAGTCTACACAGCTCAATGCACTATCAATGGTTTCAGAGACTGGAGTAAGACATGTGATTGGCATACAAACTACTCTGAAGATCAGCTATTGGAGTGCTCTATTCTGATGGTTGGGTTCCACCAGAAGGCTGGGACAGGGAAACTTACAGGGGTGCATAGGAAGTACTGCTCATCTAAATTTAGCTTCATTGCAAAATGTGAGCCAGCACGTTTTCTTCTGGAGAACCATGTTTAA 1317 0.4199 MAISDENNSNSVVPRNFQGGLNQMGDRMVGQNRRTLSVINRNLVQGRSYPYVVNKRALSEKHEVSEKKQADPVHRPITRRFAAQIASSQQSCAEKTKANDSNSSNPNGFGSSIYIDGVQKSPADDVQKSPADEPVPMALEPTEPMHSDSDQMEEVEMEDISEEPILDIDSYDVNNPLAVVEYIEDIHCFYRKVEGFSCVPPNYMEQQSDIHERMRAILIDWLIEVHDKFELVQETLFLTVNLIDRFLAKQTVVRKKLQLVGLVAMLLACKYEEVCVPVVEDLIHISDKAYTRKEILDMEKLMLNTLQFNMSVPTAYVFIRRFLKAAQADKKLELLAFFLVELSLVEYEMLKFPPSMLAAAAVYTAQCTINGFRDWSKTCDWHTNYSEDQLLECSILMVGFHQKAGTGKLTGVHRKYCSSKFSFIAKCEPARFLLENHV. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03058 438 SMART cyclin_7 220 304 IPR013763 -
Seca12g03058 438 SMART cyclin_7 317 399 IPR013763 -
Seca12g03058 438 Gene3D - 185 426 - -
Seca12g03058 438 Pfam Cyclin, C-terminal domain 313 429 IPR004367 -
Seca12g03058 438 PIRSF Cyclin_A_B_D_E 4 438 IPR046965 GO:0016538|GO:0044772
Seca12g03058 438 MobiDBLite consensus disorder prediction 84 148 - -
Seca12g03058 438 Gene3D - 199 311 - -
Seca12g03058 438 Pfam Cyclin, N-terminal domain 185 311 IPR006671 -
Seca12g03058 438 MobiDBLite consensus disorder prediction 84 114 - -
Seca12g03058 438 CDD CYCLIN_AtCycB-like_rpt1 162 308 - -
Seca12g03058 438 SUPERFAMILY Cyclin-like 312 430 IPR036915 -
Seca12g03058 438 SMART Cyclin_C_2 313 430 IPR004367 -
Seca12g03058 438 ProSitePatterns Cyclins signature. 215 246 IPR006671 -
Seca12g03058 438 FunFam G2/mitotic-specific cyclin-1 290 425 - -
Seca12g03058 438 SUPERFAMILY Cyclin-like 174 310 IPR036915 -
Seca12g03058 438 CDD CYCLIN_AtCycB-like_rpt2 313 429 - -
Seca12g03058 438 PANTHER CYCLINS 130 408 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03058 Seca-Chr12 59381472 59384922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03058 1 434 Core Cell Cycle Gene Families AT1G20610 58.371 2.93e-179 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03058 K21777 - gmx:100779889 646.351