Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03053 ATGAGTTATCCAACCTTGCTTTACTCTGAAGCCAAGTTCAAAAACTCTGATTCCTCTGCAGCAACATGTTGCTCTATATGTCTGGCAAATTACAAAAGTACTGATATGATCCAGGCACTACCTGATTGTGGCCATCAGTTCCACCTCAACTGTATAGATCCATGGTTGAGATTTCATCCTACATGTCCAGTTTGTAGAACATCTCCATTGCCAACACCACTCTCAACTCCTCTGGCTGAGGTGATTCCATTAGCAAGCACACAGAACTCATAG 273 0.4286 MSYPTLLYSEAKFKNSDSSAATCCSICLANYKSTDMIQALPDCGHQFHLNCIDPWLRFHPTCPVCRTSPLPTPLSTPLAEVIPLASTQNS. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03053 90 SMART ring_2 24 65 IPR001841 -
Seca12g03053 90 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 80 IPR045899 -
Seca12g03053 90 SUPERFAMILY RING/U-box 15 72 - -
Seca12g03053 90 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 70 IPR013083 -
Seca12g03053 90 ProSiteProfiles Zinc finger RING-type profile. 24 66 IPR001841 -
Seca12g03053 90 Pfam Ring finger domain 24 66 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03053 Seca-Chr12 59061602 59061874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03053 2 87 C3H Transcription Factor Family AT2G35910 66.279 4.88e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03053 - - gmx:100811799 151.754