Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03052 ATGGAAACAACTAAAATCATCCTCCCTCCTCCTCCTCCTCCTCCCCAAACTAAAGTAAACAGAGTCCCAAGAAAAAGGAAGGTGTCACTAAAATTGATTGAGAATTTGAAAGTAAGAAAATGTTGTTACAGAAAAAGGACTGTAGGGTTGTTAAGGAAGATAGATGAGCTTTCCATAGTTTGTGGTATCCCTATATGCTCAATCATCTCTGGTCCAGGTGATACTGAGCCTAAAGTATGGCCATCCCCTGAAGTGGCTAGACAACTACTACAGAGGCTTGAGGAAGTTCCAAATGGTGTTAAGTCCAGAAAAGTGGTTACGCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAAGTTGCCAGGCTCAAGGAGAGGAATAATGAGAAATACATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAACCTAGTGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAGCTGGACAAAGTTAGAATGAGAACCAAGCATTTTAAGCAGGTGTTGCCTCCTAATCCTCCTCCTCCACCAGTGTCTTGTCCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAATTGATGGAGGCAATTATGAAGGTCTCAATGTTGGAAGTGACTCAGGGGTGTTACTTCAAGACAAATTTGGAGGTCTCAATGGTGAAAGGGATTTAGGAATGTTGCTTGAAGACAATTTTGAAGGTCTCAATGGTGAAAGGGGTGATAGATCACAGGTGTGGCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCTTAGAGATGTATAATTTTGAAGGTCTCAATGGTGAAAGTGGTGATAGTTCACAGGTGTTGCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCTTAAAGATGTTGTTTGAAAGTAATTTTGAAGGTCTCAATGGTGAAAGTAATTCAAGGCTTCTGAATGGAAGCTCTACTGATGAAATTGGAGGTAGTAACATATGGCCATCTTATGGACACTTTGAAAGTACAATTGATGGAAGTTACATGGAAATAATGCAACATAATGAAAATCAATGGGGGTTCATTAACAACTTTGGAGCCAACACTCATGAAGCTGCCATGCGGAGATTCAATGCAAACTTTGTTGGTAATAACAATGGAAATAACTTGAATTTTGGATTACCTACTCATGGAAATTTTGCTAGTAGCAGTAAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAATTTTCCTTGA 1287 0.3885 METTKIILPPPPPPPQTKVNRVPRKRKVSLKLIENLKVRKCCYRKRTVGLLRKIDELSIVCGIPICSIISGPGDTEPKVWPSPEVARQLLQRLEEVPNGVKSRKVVTQLSFMRDKTKKLENQVARLKERNNEKYMSILMHQIHHDGKSLSDFEPSDLKCLLGYVEQKLDKVRMRTKHFKQVLPPNPPPPPVSCPQGNFGGLNGEIDGGNYEGLNVGSDSGVLLQDKFGGLNGERDLGMLLEDNFEGLNGERGDRSQVWPEGNFGDLNDGSDLLEMYNFEGLNGESGDSSQVLPEGNFGDLNDGSDLLKMLFESNFEGLNGESNSRLLNGSSTDEIGGSNIWPSYGHFESTIDGSYMEIMQHNENQWGFINNFGANTHEAAMRRFNANFVGNNNGNNLNFGLPTHGNFASSSKFGSDTQVPTSFGGNFP. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03052 428 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Seca12g03052 428 Gene3D - 37 137 IPR036879 GO:0003677|GO:0046983
Seca12g03052 428 Coils Coil 109 132 - -
Seca12g03052 428 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g03052 428 CDD MADS_SRF_like 25 97 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca12g03052 428 SUPERFAMILY SRF-like 25 117 IPR036879 GO:0003677|GO:0046983
Seca12g03052 428 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 73 IPR002100 GO:0003677|GO:0046983
Seca12g03052 428 ProSiteProfiles MADS-box domain profile. 23 69 IPR002100 GO:0003677|GO:0046983
Seca12g03052 428 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03052 Seca-Chr12 59050745 59052031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03052 25 188 Type I MADS-box Gene Family AT2G40210 32.927 5.66e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g03052 SRF-TF 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03052 - - gmx:106798339 217.238