Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03009 ATGGGCGCATCCAACAGATGGTTGAGAATAGTTCGTAGCAAGTTCCTAAGATCATCCAACAATAAAGGCATAGGCATAACAATCCCCCCTCGTACGAGTGTTTGCACAAATCAAAGCGAAGAAGCCATACTCAATCAGAATGAAGCAACCACAACCACAACTTCCACGATGGAAGACTTCAATTTGCCAATACCAAATTCTTCGACGAGGATATTATCCAAGGAAGACATTGCAGCAATTAAGATCCAAGCTTATTTCAGGGGTCACCTTGCAAGAAGAGCATATAGGGCTTTGAAGAGCCTGGTGAAGTTGCAAGCTTTGGTTCGTGGGGTGTGTGTAAGGAGACAATCACGTATAGCGATGCAGTGTATGCACGCGCTTGTTCGCTTACAAGTCAGGATTCGTGCAAGACAATTACTTGGTTCTAGTAGTTTTGATAATTAA 444 0.4324 MGASNRWLRIVRSKFLRSSNNKGIGITIPPRTSVCTNQSEEAILNQNEATTTTTSTMEDFNLPIPNSSTRILSKEDIAAIKIQAYFRGHLARRAYRALKSLVKLQALVRGVCVRRQSRIAMQCMHALVRLQVRIRARQLLGSSSFDN. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03009 147 Pfam IQ calmodulin-binding motif 78 96 IPR000048 GO:0005515
Seca12g03009 147 Gene3D - 73 126 - -
Seca12g03009 147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 119 IPR027417 -
Seca12g03009 147 ProSiteProfiles IQ motif profile. 99 126 IPR000048 GO:0005515
Seca12g03009 147 ProSiteProfiles IQ motif profile. 75 103 IPR000048 GO:0005515
Seca12g03009 147 SMART iq_5 97 118 IPR000048 GO:0005515
Seca12g03009 147 SMART iq_5 74 96 IPR000048 GO:0005515
Seca12g03009 147 PANTHER IQ-DOMAIN 5-RELATED 4 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03009 Seca-Chr12 58251381 58252364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03009 62 140 IQD Protein Family AT3G51380 70.886 2.67e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03009 - - cam:101507643 194.512