Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03006 ATGAATTTTAATTCTTCTATGTATACTTCCCATTTACCAGAATCGCTTTTACCAAGCGAAGCATCACCCGAATGGAACAACAAAGCAGACAACGCATGGCAACTCACAGCAGCAACACTAGTGGGCCTTCAGAGTGTTCCTGGGCTTGTGATACTCTACGGTAGCATGGTTAAGAGAAAATGGGCCGTGAATTCTGCCTTTATGGCCCTATATGCTTTCGCTGCTGTCCTCATTTGTTGGGTTTTATGGGCCCATCGCATGGCATTTGGCACTAAGCTTATGCCATTTGTTGGAAAGCCCAACAATGCCCTGACGGAGAAGTTTCTCCTTGCCCAGTCATCAACACATGATTATTTTCCAATGGCTGACTTTGTGTTCTATCAATTTGCTTTTGCTGCAATTACTGTTGTGTTGCTTGCAGGGTCTTTGCTTGGGAGAATGAATTTCTATGCATGGATGATGTTTGTTCCTATGTGGCTTACACTGTCTTACACCATTGGTGCTTTCAGCATATGGGGTAATGGCTTCCTTGAACAAAAAATAATTGATTATGCCGGTGGCTTTGTTATTCATCTATCTTCAGGTGTGGCAGGTTTCACAGCCGCTTATTGGGTTGGTCCAAGAATTACACAAGACAGACAAAACTTTCCACCAAATAACATAACTCACATGCTTGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGTTTTAATGGTGGAGCTCCATTTCAAGTGGGAGAAATCGCTTCCTTGGCCATCTTCAACACCCATCTATGCACTGCCACAAGCCTACTTGTTTGGCTTTCCCTGGATATGATTGTATATAGGAAGAGCTCAGTGATAGGTGCTGTCCAAGGAATGATGACTGGCCTTGTTTGCATCACCCCAGGTGCAGGCTTGGTTGATTCATGGGCAGCAATATTGATGGGAGCTTTATCCGGTTCAATTCCGTGGTACACCATGATGGTGTTGCACAAGAGATCAGTGTTATTTCAGAGTGTGGATGATACATTAGGAGTCTTTCACACTCATGCTGTGGCCGGTATTCTTGGGGGATTCCTTTCTGGTGTGTTTGCCAAACCCAAACTTTTAAACATGATCTATGGTCATGGAATGACATATGGTCCTGGCTTATTCTATAGCTATTTTGAGGGGAATTTGGTACAAGGTTTAAAGCAACTATGGTACCAGTTATTAGGAGCAACTTTTATTACTCTTTGGAATGTCATTGTTACTAGCCTCATATGTATTCTTATAAGCCGCATTGTGGATCTTAGGATGCAAGAAGAGGACCTTGAGGTTGGTGATGATGCTGCTCATGGGGAAGAAGCTTATGCATTGTGGGGTGATGGAGAAAGAATGCGAGTCGCTCTTCGTCTTCATATAAGTCCAACAATTCCTTCCATTTGTCGGCAGAGGTTTTTGATTCCTGTCAATAGGAAAGAAATGGAATAA 1458 0.4335 MNFNSSMYTSHLPESLLPSEASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFAAVLICWVLWAHRMAFGTKLMPFVGKPNNALTEKFLLAQSSTHDYFPMADFVFYQFAFAAITVVLLAGSLLGRMNFYAWMMFVPMWLTLSYTIGAFSIWGNGFLEQKIIDYAGGFVIHLSSGVAGFTAAYWVGPRITQDRQNFPPNNITHMLGGAGFLWMGWTGFNGGAPFQVGEIASLAIFNTHLCTATSLLVWLSLDMIVYRKSSVIGAVQGMMTGLVCITPGAGLVDSWAAILMGALSGSIPWYTMMVLHKRSVLFQSVDDTLGVFHTHAVAGILGGFLSGVFAKPKLLNMIYGHGMTYGPGLFYSYFEGNLVQGLKQLWYQLLGATFITLWNVIVTSLICILISRIVDLRMQEEDLEVGDDAAHGEEAYALWGDGERMRVALRLHISPTIPSICRQRFLIPVNRKEME. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03006 485 ProSitePatterns Ammonium transporters signature. 183 208 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca12g03006 485 FunFam Ammonium transporter 15 449 - -
Seca12g03006 485 PANTHER AMMONIUM TRANSPORTER MEP2 15 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca12g03006 485 PRINTS Rhesus blood group protein signature 128 144 IPR002229 GO:0005886
Seca12g03006 485 PRINTS Rhesus blood group protein signature 253 275 IPR002229 GO:0005886
Seca12g03006 485 PRINTS Rhesus blood group protein signature 222 240 IPR002229 GO:0005886
Seca12g03006 485 SUPERFAMILY Ammonium transporter 25 427 - -
Seca12g03006 485 Pfam Ammonium Transporter Family 32 446 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca12g03006 485 NCBIfam ammonium transporter 30 446 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca12g03006 485 Gene3D Ammonium transporter AmtB like domains 8 449 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03006 Seca-Chr12 58162191 58168560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g03006 121 454 Inorganic Solute Cotransporters AT2G38290 60.299 5.85e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03006 K03320 - gmx:100815876 838.95