Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02999 ATGGTAGTTTCATCCCATCTTCTCTCGTGTCTGTCTTACACACTAAGCATTCGTGTAAAGGGAATAGCTGCTGTATCTTCATCTTTTTTATTCTGCATATTTTTATATAATAACTCTTGCTTAAACCCAAATCTCACACTTAGAACAACATCACCCCAATTTCTGATGGAGTTTGTGCCAAATCAATCCTCTTTGTTGGGTAATTCCTTTGGGAATTTCGTTGAGAGGATCAAACGGGTTGGTAGCCTCGCCATCTCTGCCATCATTGGGAACATCTTCTCTGCGATCTTAACCTTCTGCTTTGCATTCGTGGGCACTTTGTTGGGGGCTTTGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTCGAGGAGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGAATTAGGTGTCTCTTATACTTGATTGATGTTCTTGCTAGCCTACTGAGTGGGAGACTTGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGGTAATTATGGGTGCTACTGAAATAAGCTTTGATGAAGTTCAGAACATCTTTGACATTGGAGGTGCCAAAGGTTTGTCAAGTGCTTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAAAAATGTTGATGCATCTGGTGAAAGAGTTTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATTGACAAGTGGCTCATCAAGCATGGTTCTTGCCCATTATGCAGACGGGATCTGTAA 870 0.4264 MVVSSHLLSCLSYTLSIRVKGIAAVSSSFLFCIFLYNNSCLNPNLTLRTTSPQFLMEFVPNQSSLLGNSFGNFVERIKRVGSLAISAIIGNIFSAILTFCFAFVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIRCLLYLIDVLASLLSGRLVRERIGPAMLSAVQSQVIMGATEISFDEVQNIFDIGGAKGLSSASVEKIPKITITSDKNVDASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLIKHGSCPLCRRDL. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02999 289 CDD RING-H2_NIPL1-like 243 286 - -
Seca12g02999 289 ProSiteProfiles Zinc finger RING-type profile. 244 286 IPR001841 -
Seca12g02999 289 Pfam Ring finger domain 243 286 IPR001841 -
Seca12g02999 289 SUPERFAMILY RING/U-box 229 289 - -
Seca12g02999 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 289 IPR013083 -
Seca12g02999 289 FunFam NEP1-interacting protein-like 1 204 289 - -
Seca12g02999 289 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 73 288 IPR044523 -
Seca12g02999 289 SMART ring_2 244 285 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02999 Seca-Chr12 58056413 58059094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02999 74 289 C3H Transcription Factor Family AT5G66070 75.000 1.28e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02999 - - gmx:100816939 392.504