Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02998 ATGGAGGCTTCACCATCTGCAACAGCACAATCACCTTTGAAAAACAAGAGTGCATCTGCACATGATATGTTGCTGGGATTTATTGCAGGCATTTCAACTGTAATTGTTTTGGCCTTATTGCACTACCTCTTCAGGAGAAAGGTCATTCCATTTCTTAAGCAACACAAGACACTGAAAGGAAAGGGGTATAAAAGCTTGAAATATGACAAAATATCATTGAGGCGTTTTGATTTTGAGGAACTAGAGAGGGCTACCAAAAATTTTAGCCAAGATTGCTTAGTGGGTTCTGGTGCATTTGGAAATGTCTACAAGGGAACCTTTGACTTAGAAGGAACACTAGCCATTAAGAGAGCTCATTCTGAATCATTCTTAAGTGTGGAAGAATTCAGAAATGAAGTTAGGCTCCTTTCAGCAGTAAAGCACAGGAATCTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACAACATGGAGCCAAAATACTAGTCTATGAATATGTACCAAATGGTTCACTCCTTGAGTACATGATGGGGAACAGAAGGAGGAGCTTAACTTGGAAGCAAAGAGTAAACATAGCAATAGGAGCAGCTAGAGGTATATCCTTAATCCCCAGATGA 618 0.3981 MEASPSATAQSPLKNKSASAHDMLLGFIAGISTVIVLALLHYLFRRKVIPFLKQHKTLKGKGYKSLKYDKISLRRFDFEELERATKNFSQDCLVGSGAFGNVYKGTFDLEGTLAIKRAHSESFLSVEEFRNEVRLLSAVKHRNLIGLVGYCEEPEQHGAKILVYEYVPNGSLLEYMMGNRRRSLTWKQRVNIAIGAARGISLIPR. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02998 205 Gene3D Transferase(Phosphotransferase) domain 1 63 203 - -
Seca12g02998 205 SUPERFAMILY Protein kinase-like (PK-like) 66 203 IPR011009 -
Seca12g02998 205 FunFam Putative LRR receptor-like serine/threonine-protein kinase 53 166 - -
Seca12g02998 205 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 200 - -
Seca12g02998 205 ProSiteProfiles Protein kinase domain profile. 88 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02998 205 Pfam Protein tyrosine and serine/threonine kinase 93 201 IPR001245 GO:0004672|GO:0006468
Seca12g02998 205 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524
Seca12g02998 205 SMART tyrkin_6 88 205 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02998 Seca-Chr12 57955812 57959366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02998 74 200 Receptor kinase-like Gene Family AT2G21480 45.669 2.69e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca12g02998 PK_Tyr_Ser-Thr 1.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02998 - - lja:Lj1g3v0715600.1 325.094