Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02997 ATGCTATCAAGGTTGATGGACTTCCTGAGCGCCTGCTGGCGGCGAAGATCGTCGGACCGCAAGGGTTCCGATGTTTCCGGGCGGAAGGAGGGGCTGCTGTGGTACAAGGACGGCGGTCAACACTTGTTTGGTGATTACTCAATGGCGGTTGTGCAGGCCAACAACTTGCTCGAGGATCAGAGCCAGATTGAGTCTGGTCCCCTTAGCTTCCTCGATACTGGTCCTTATGGTACTTTTGTTGGTGTGTATGATGGTCACGGTGGACCTGAGACATCGCGTTACATTTGTGATCACCTCTTCCAACATCTAAAACGTAGATTTGCATCTGAGCAGAAGTCCATGTCTGTGGAGGTTATTCGGAAGGCGTACCAAGCCACAGAAGAAGGTTTTCTGTCAGTGGTTACCAAACTGTGGCCTATGAATCCCCAAATTGCTGCTGTTGGATCTTGTTGTTTGGTTGGTGTGATTTGTGGTGGTATCCTCTATATTGCTAACCTTGGTGATTCCCGTGCTGTGCTTGGGCGGGTTGTCAGGGCAACTGGGGAGGTTTTGGCGATCCAACTCTCGTCAGAGCATAATGTGGCCATAGAATCTGTGAGACAAGAGATGCATTCTTTGCATCCAGATGACTCAAAAATTGTGGTTCTGAAGCACAACGTGTGGCGTGTGAAGGGTCTGATACAGGTTTCTAGATCCATTGGGGATGTATACCTTAAAAAGGCAGAATTTAACAAGGAACCGTTGTATGCTAAGTTTCGTCTTCGGGAAACTTTCAAAAGGCCAATTTTGAGCTCTGACCCATCAATTTCTATTCATGAACTTCAACAGCATGATCAATTTCTGATATTTGCTTCGGATGGTCTTTGGGAACACCTTAGCAATCAGGATGCTGTTGATATAGTTCAAAATCACCCACACAGTGTAAGAGGAAGTGCTCGGAGGCTCATCAAAGCTGCTTTGCAGGAAGCAGCTAAAAAAAGAGAGATGAGGTACTCTGATCTGAAGAAAATCGACCGCGGTGTCCGCCGCCATTTCCACGATGACATCACAGTCATAGTTGTATTTCTTGACTCCAACCTTGTCAGTAGAGCCAGCACAGTAAGAGGTCCTCCTTTATCAGTGAGGGGAGGTGGTGTTCCCCTGCCTTCTAGAACTTTGGCTCCCTGTGCAGCACCTATGGAACTTAGTTCTGGTTGA 1197 0.4762 MLSRLMDFLSACWRRRSSDRKGSDVSGRKEGLLWYKDGGQHLFGDYSMAVVQANNLLEDQSQIESGPLSFLDTGPYGTFVGVYDGHGGPETSRYICDHLFQHLKRRFASEQKSMSVEVIRKAYQATEEGFLSVVTKLWPMNPQIAAVGSCCLVGVICGGILYIANLGDSRAVLGRVVRATGEVLAIQLSSEHNVAIESVRQEMHSLHPDDSKIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNKEPLYAKFRLRETFKRPILSSDPSISIHELQQHDQFLIFASDGLWEHLSNQDAVDIVQNHPHSVRGSARRLIKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASTVRGPPLSVRGGGVPLPSRTLAPCAAPMELSSG. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02997 398 Gene3D - 32 366 IPR036457 -
Seca12g02997 398 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Seca12g02997 398 FunFam Phosphatase 2C family protein 34 366 - -
Seca12g02997 398 SMART PP2C_4 37 354 IPR001932 -
Seca12g02997 398 PANTHER PROTEIN PHOSPHATASE 28 354 IPR015655 GO:0004722|GO:0006470
Seca12g02997 398 CDD PP2Cc 43 356 IPR001932 -
Seca12g02997 398 ProSiteProfiles PPM-type phosphatase domain profile. 45 356 IPR001932 -
Seca12g02997 398 Pfam Protein phosphatase 2C 78 324 IPR001932 -
Seca12g02997 398 SUPERFAMILY PP2C-like 54 357 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02997 Seca-Chr12 57939249 57954292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02997 1 384 PP2C-type Phosphatase Gene Family AT3G51370 76.823 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02997 K01102 - gmx:100777920 741.11