Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02975 ATGAGTTTTCCTTACTATCTTCCACTCTTCAAGATGTCACCTCCGTCATTTGCATCAGGAAGTGATGCCAGTGACGTAACCCATCAATTACCAATGAACAGCGAAGCATTTGACCCACATTCAGAGTTGGATCAACCCCCTGCGTTCAAGAGGGCCAGGACTTTTGATAGCAGCCACTCCAATGCCCCTCCAAGGATGATTCAACCACCACCAAACCCCCAATTCAACAAAGGAACGAGTCACATTTTCTTCAAGACTCACATTTGTGCCAAGTTCAGAATTGGTGCATGTAGGAACGGTGAGAACTGCAATTTTGCACATGGAGTTGAAGACACAAGGCAGCCACCACCAAATTGGCAGAAGCTTGTTGGCTTATGTAATGAAGAACGGTCTTTATCAGGGAATTGGGATGAGGACCAGAAAATAATTCATAAGATGAAGCTGTGCAAGAAGTATTACAATGGAGATGAACTCTCTTATGGTGAAAAGTGTAGTTTTCTTCATGAGGACCTCGCCAAGTTCAGGGATGATTCGGGGAGGTTTAGGGAGAGCTCATCAATAAGCATAGGAACTAATGGATACCCAAAGTCCTATGGTGACGACTCTAATAATTCACAAGGTAATAGAGTTGTGAACACTGGCCAAAATGTTTCACGGGGAAATGGAAAGTTCACTTATTGGAAGACTAAACTATGTATCAAGTGGGAGACAATAGGTCGTTGTTCCTTTGGGGAGGATTGTCACTTTGCCCATGGACAAGGAGAGTTACAATTTCCTGGACGACGCATTGAAGCCGAAACTGCAGGTGCCATTTCAAATTCAACTAAAGTTATCATTCCAATTATACCAAAAGCCTTATCAGTTTCTTCCAATGATGCTCCTACTAACTACATAGCAAGTCTACCTCTGCCAAATGAAGAGGTGGAGGGTAAGAAGAATTTACTCAAGTGGAAAGGAACCAAGAAGATAAATCAAATTTATGGTGATTGGATTGATGATTTACCGCTGGTTCCCAACTTGCCAAGTAGAGCCGAGACCTGA 1041 0.4294 MSFPYYLPLFKMSPPSFASGSDASDVTHQLPMNSEAFDPHSELDQPPAFKRARTFDSSHSNAPPRMIQPPPNPQFNKGTSHIFFKTHICAKFRIGACRNGENCNFAHGVEDTRQPPPNWQKLVGLCNEERSLSGNWDEDQKIIHKMKLCKKYYNGDELSYGEKCSFLHEDLAKFRDDSGRFRESSSISIGTNGYPKSYGDDSNNSQGNRVVNTGQNVSRGNGKFTYWKTKLCIKWETIGRCSFGEDCHFAHGQGELQFPGRRIEAETAGAISNSTKVIIPIIPKALSVSSNDAPTNYIASLPLPNEEVEGKKNLLKWKGTKKINQIYGDWIDDLPLVPNLPSRAET. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02975 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Seca12g02975 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Seca12g02975 346 Gene3D - 82 180 - -
Seca12g02975 346 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Seca12g02975 346 PANTHER CCCH ZINC FINGER/TIS11-RELATED 35 175 IPR045877 GO:0003729
Seca12g02975 346 MobiDBLite consensus disorder prediction 192 215 - -
Seca12g02975 346 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Seca12g02975 346 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Seca12g02975 346 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Seca12g02975 346 Gene3D - 223 258 - -
Seca12g02975 346 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Seca12g02975 346 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Seca12g02975 346 FunFam Zinc finger CCCH domain-containing protein 222 258 - -
Seca12g02975 346 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
Seca12g02975 346 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Seca12g02975 346 MobiDBLite consensus disorder prediction 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02975 Seca-Chr12 57072939 57074930 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g02975 zf-CCCH 3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02975 - - gmx:100793865 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02975 12 57072939 57074930 Seca12g02975 12 57072939 57074930 ECH