Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02973 ATGGATGAAGATTTGCTGAAGCGCAACACTGATTGCGTTTATTTCTTGGCCTCTCCCCTCACTTGCAAGAAGGGAACTGAATGTGAGTATCGGCATAATGAGATTGCGAGACTTAACCCGAGGGATTGCTGGTACTGGTTATCCGGGAGTTGCATTAATCCAACTTGTGCTTTTAGACACCCTCCTTTGGATGGGAATACTGGAGTGCCTTCTGAACCTACACAATCTTCATTACCTGCAAACAAGACAATGGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAAATGCTCATTTTTGCATGGGCCTGATGATAGCTTTTTTAGTACTGTAAAGCCTGTGAAGAATGACAATGGAAGCATCAATGCTCTCAACCTAGAAAATAAAATTTCATCAGGAAATAAAACAGGTGTAGGATCAACACCTACTGAAAAGCATTTTGACCAATCTTTAACTGCCCCAAAAGCTTTGTCTGATCTTAAACTTCAGCCTAAGGAAGATCGCCAGCTACCATTACCTGAAAGTGTTAAACAGCAAGGTGATTGCCTGGAGTCATCTGCTTTTGACTATAAAGAAGCTACAGTGACTAGGTCTCTGTTTCGAGATGACGACTTTGTTCATAACATATCTCATTTATGCACTGAGCAGAGTTCAGAGGAACAAGTAAATAGTCACGTAGAGCCTGAGGAGCGTTGGGAATCATCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGAGAACCTGGGTTATGAGGATGATTCTGAATATTTGCCAGTGCTTGATATGGATGAGCAGGAACTGAATGAGCAATACTCACGGTATGAATTTGAAGATCCAGTTGAGTATGATACTATGTGCCTAGATGCTGATATTCTGTATGAGCAAGGAGCGTATGATGGTTACAAATGTTTTGATAGAGATTTAACTCATGCTAATGGCGGAAAATTTCAAGCTTATTCCAGAGAAATAATCTTAGATTCTATATTATCCCCGAAAAGGATTCGGATGTCAGCCGAGATGGCTGCTTGTGACAAGAATTTAGATCTACGTGACCGTCTGAGGAGGCGTAGGGAGATTAATGATCCTCCTGTTTTCTTAAGAAGACATGAATCATCTTCTTTGATGGTTCGGAATCAAGAAAGGCATCAAAGGCATGGCCTAGGTCAACGGCTAAGTAGAAGATTGACATCACAGTTGGGATTTAGCCCTATAGACTCGATCAGAGAGGTTGAAACTCTTTCAGTTGCTAACAAGCACAGGTTATTTAGGCATTCCCATCAACATAGGCCCATAAAGCATTATAGAGAAAAGCTAGCAAAACGGCAGTTCCTTTCATCTAAAATGCCCAGGAAACCATTTTTAAAGCAAAGAAGATTTATTCAGGAATCCACTACATTTTCAGGACCTAAGACTCTTGCAGAAATTAAGGAAGAGAAGAAGAAGGCTGAAGAAAGTTTACATTGTCAAAGCACATCAGCTGATTTCCAGGATCCCAAACCTCTGAATGAAATTCTCAAGGACAAAAGGACCGTCGATCGAGTGAGAGATGACAATATCTGCAACAATTGA 1584 0.4066 MDEDLLKRNTDCVYFLASPLTCKKGTECEYRHNEIARLNPRDCWYWLSGSCINPTCAFRHPPLDGNTGVPSEPTQSSLPANKTMVPCYFFFNGFCNKGDKCSFLHGPDDSFFSTVKPVKNDNGSINALNLENKISSGNKTGVGSTPTEKHFDQSLTAPKALSDLKLQPKEDRQLPLPESVKQQGDCLESSAFDYKEATVTRSLFRDDDFVHNISHLCTEQSSEEQVNSHVEPEERWESSPGFDVLVHDESENLGYEDDSEYLPVLDMDEQELNEQYSRYEFEDPVEYDTMCLDADILYEQGAYDGYKCFDRDLTHANGGKFQAYSREIILDSILSPKRIRMSAEMAACDKNLDLRDRLRRRREINDPPVFLRRHESSSLMVRNQERHQRHGLGQRLSRRLTSQLGFSPIDSIREVETLSVANKHRLFRHSHQHRPIKHYREKLAKRQFLSSKMPRKPFLKQRRFIQESTTFSGPKTLAEIKEEKKKAEESLHCQSTSADFQDPKPLNEILKDKRTVDRVRDDNICNN. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02973 527 Pfam Zinc-finger containing family 7 65 IPR041686 -
Seca12g02973 527 Coils Coil 477 497 - -
Seca12g02973 527 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Seca12g02973 527 Gene3D - 72 154 - -
Seca12g02973 527 Gene3D - 3 63 - -
Seca12g02973 527 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Seca12g02973 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 107 IPR000571 GO:0046872
Seca12g02973 527 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 519 - -
Seca12g02973 527 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Seca12g02973 527 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Seca12g02973 527 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Seca12g02973 527 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Seca12g02973 527 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Seca12g02973 527 SUPERFAMILY CCCH zinc finger 81 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02973 Seca-Chr12 57022446 57026057 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g02973 zf-CCCH_3 2.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02973 - - aprc:113847503 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02973 12 57022446 57026057 Seca12g02973 12 57022446 57026057 ECH