Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02943 ATGGGTTCTATTGGAATTGAAAGCACGGGACCAGAGGTTGTGACCGTTGATGTGCTTGCAGCCAAGGGTTTGATCCAGACCAGCCATGTTTATCTAGATGTCAGGACGGTGGAAGAGTTTCAGAAAGGGCATGTGGATGCAGAGAAGATCATTAACATAGCATACATGTTCAATACACCCCAAGGCAGGGTGAAGAATCCAGAGTTTCTAAATGAGGTTTTGTCTGTTTGCAAGAAAGAAGATCACCTCATCGTGGGTTGCCAAAGTGGAGTGAGGTCTCTGTATGCAACAGCTGATCTTCTGGCTGAAGGCTTTAAGGATGTAAACAACATGGGAGGAGGGTATCTGGACTGGGTTAAAAATGAATTTCCAGTGAAGGCACCTAAAAAGGAACTCTCATCAGTTGTGTGA 411 0.4501 MGSIGIESTGPEVVTVDVLAAKGLIQTSHVYLDVRTVEEFQKGHVDAEKIINIAYMFNTPQGRVKNPEFLNEVLSVCKKEDHLIVGCQSGVRSLYATADLLAEGFKDVNNMGGGYLDWVKNEFPVKAPKKELSSVV. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02943 136 PANTHER THIOSULFATE SULFURTRANSFERASE 18 7 130 IPR044684 GO:0003824
Seca12g02943 136 ProSiteProfiles Rhodanese domain profile. 29 127 IPR001763 -
Seca12g02943 136 CDD RHOD 20 119 - -
Seca12g02943 136 Pfam Rhodanese-like domain 27 120 IPR001763 -
Seca12g02943 136 Gene3D - 7 127 IPR036873 -
Seca12g02943 136 SMART rhod_4 16 124 IPR001763 -
Seca12g02943 136 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 12 125 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02943 Seca-Chr12 56126966 56128981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02943 3 134 Sulfurtransferasese or Rhodanese AT5G66170 55.303 6.03e-51 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02943 - K15692 gmx:100792251 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02943 12 56126966 56128981 Seca12g02943 12 56126966 56128981 ECH
Seca10g01061 10 10184933 10188795 Seca12g02943 12 56126966 56128981 PCT