Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02940 ATGGAATTTGATAGTGTAGATGAAGCTTGGGAATTTTGGCATGAATATGGTAAAAAAACTGGCTTTGGAGTTAGAAAACAATACTTCAACAAAAGGAAGAAAGATGGCTCGATTAGATCATGCAGGTTTGTTTGTTACAAGGAAGGTAAGCGAACATCGGACAAGAGATCTTTTTTAGTTAAGAATCCTAGGGCAGAAACAAGAACTGAGTGCAACGCAAGAATAACTCTTAGTGAAAAGAATGGGAAGTTTGTCATCCATGAGTTCATAGAGGACCATAACCACCCTTTACAACTTGTAGACTCTGGATTGATACAAAAGGCCTCATTTCAACTTATGAGCACATATGTAGGAGGTAGAGCTAATCTCGAATATACAAGGTTGGATGCTAAGAACTATCTCAAAGTAAGAAGACAACGTAGTATGGTGTATGGGGAAGCCGGTGGTCTTATGCAGTATTTTCAGCACCAATTATTGGAGAATCCCTCATTTTACCATGCATATCAAATGGATTGA 516 0.3818 MEFDSVDEAWEFWHEYGKKTGFGVRKQYFNKRKKDGSIRSCRFVCYKEGKRTSDKRSFLVKNPRAETRTECNARITLSEKNGKFVIHEFIEDHNHPLQLVDSGLIQKASFQLMSTYVGGRANLEYTRLDAKNYLKVRRQRSMVYGEAGGLMQYFQHQLLENPSFYHAYQMD. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02940 171 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 137 - -
Seca12g02940 171 Pfam FAR1 DNA-binding domain 11 98 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02940 Seca-Chr12 56092702 56093275 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g02940 FAR1 1.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02940 - - mtr:112419311 239.195