Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02936 ATGGCCGAGTCAGCATCTTCTTCTTCCTTCAACTATGGATTCGCCTATGATGTATTCATCAGCTTCAGAGGCCTAGATACTCGCCATGGTTTTACTGGCAATCTTTACAAAGCTCTTCTTAATAGGGGAATCCACACTTTTATTGATGATGAGGAGCTTCAGAGAGGACAAGAAATTACACCATCACTTCTCAAGGCAATTGAAGAGTCCAGGATTGCCATTATTGTTCTCTCTGAGAACTATGCATCTTCTTCCTTTTGTTTAGATGAACTTGTCAAGATCCTTGACTATAATAAGGGAAAGGATGACCGGTTGGTCTGGCCAATTTTTTATTGTGTGGATCCTTCTGATGTGAGAAAGCAGACAGGGACTTATGGAGAAGCTTTGTCTATACATAAAGAGAGGTTTGGTGACAACAATGAGAGGTTGCAGAAATGGAGGATGGCTTTACAGCAAGTAGCTAACTTGTCTGGTTGGCATTTCAAGCTCGGGGATGGATATGAATATGAGTTTATTGAGAAGATTGTTGAACGTGTGTCAAGAAAGATTAAACATGCTGCTTTGCCAATTGCCGATTACCCAGTTGGACTGGAGTCACAAGTGTCAGAGGTAAATTCGCTTCTCGATGTTGGGTCTGATGGAGTTCACATGTTAGGGATCTATGGAATTGGTGGAATTGGTAAAACAACACTTGCTCTAGCTGTTTATAACTTGATTGCTGACCAATTTGAAGGTGTATGTTTTCTTGAAAATGTGAGAGAGAACTCAAACAAATATGGGTTACAATATCTCCAAGAGATCCTTCTTACTGAAATACTTGGAGAGAAGAAAATTAAGATAACAAGTGTAAGACAAGGCATTTCAATAATACAACATAGACTCCAACAAAAGAAGGTACTTTTGATTCTAGATGATGTTGACAAAATACAACAATTGGAGGCAATTATTGGAGGATCTAAATGGCTTGGTTTTGGCAGTAGAGTAATAATTACAACCCGAGATAAACATTTGTTATCATTGCATGGGGTTAACAAAACATACAAGGTAAAGAAGTTAAATAACAAGGATGCTCTTCAATTGCTTACTTGGAAAGCTTTTAAAATGGAAAAAGTTGATTCTAGTTACATGGATGTCTTGGATCAGGCAGTAACCTATGCTTCAGGACTTCCATTGGCTTTAGTAATAATAGGTTCCAACTTGTTTGGCAAAACTATAGAGGAATGGAAGTCTTTATTACGTCAATATGAAAGCATTCCTAATAAAGAGATCCAGGAGATACTCAAGGTAAGCTTCAATGCTTTACAGGAAAATGAGCAAAGTGTTTTTCTTGACATTGCTTGTTTCTATAAAGGAAAAGTATTTAGATTGGTGGAGGATATGCTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGAGTGTTGGTTGAAAAATCTCTGATAAAGATTAGTTGGCCTCCTATAGTGACTCTACATGATTTGATCGAAGACATGGGTAAAGAAATTGTCAGACAAAAATCACCAAAAGATCCTGGGAAACGCAGTCGTTTATGGAACCATAAAGATATAGTTCAAGTTTTAGAAGAAAATACGGGAACTAGAGCAATTGAAATGATATATTTGGAGTTCGGCCGCTGTTCTGAAAATGTGATAGAATTGGATGAAATGGCCTTCAAGAAGATGAAGAACCTCAAAACACTTATCATTAAAGATGGTTATTTTACAAAAGGACCGAAACACCTTCCAAACAGTTTAAGAGTACTCGAATGGTGGAGATATCCTTTAGAGTATTTGCCATCAAAGTTTCATCCAAAGAAACTTTCCATATTCAACTTACCCAAAAGTTGCTTAACATCAGTCCAATTGGTAGACTCAATAAAGAAGTTTGTGAATGTGAGAAATTTGAATTTCGATGACACAGAGTGTTTGACACAAATACCTGATGTATCTTCTCTCCCAAATTTAGAAATTTTTTCATTTCAACGTTGTCAGAATTTAATTACAATTCACAATTCAATTGGGTTCTTGGATAAACTTAAAACCTTAAGTGCTTCTGGTTGTAGCAAGCTTAGGAGTTTTCCAGCTATCAAATTGATCTCCCTTGAGCAACTCAATCTTTCATTTTGCTCAAGTCTTGATAGTTTTCCAGAAATATTAGGAAAGATGGAAAATATAACAGAACTTGTGTTGGATGAAAGTTCCATCAAAGAATTGCCATGTTCATTTCAAAACCTTGTTTGTCTTCAAACATTACAAATTCGTTTCTGTGGAATGCTTAAGTTACCAAGTAGTATTTTCATGATGCCGAAACTAATTGAGATTATTGCTTGGAGATGGGATGGGTGGCTATTTCCTAATCAGGATAAAGGTGAAGAAAATGTGAGCTCAATGGTGTCTTCAAACGTAGAATGTCTTCGTCTCTTTCATTGCAACTTGTCAGATGATTTTTTTTCAGTTGGACTCAAGTGGTTTGTTAATGTGAAAGAATTAATGCTACCAAGAACTAATATTACAATTCTTCCGGAATGCATAAAAGAATTTCGCTTTTTAAAGAATATTTGTTTGGATTATTGCCCACATCTTCGAGAAATTAGAGGGCTTCCACCAAACCTAGAAATTTTTTTGGCACGACACTGCAAATCTTTGACTCGTACAAACATGTTGCTGAATCAGGAACTACATGAGGCTGGAAACACCATGTTTTATTTTCCAGGAGCAAGAATTCCAAATTGGTTTGAGCACCAAAGCAAGGAAGGGTCAGTTTCTTTTTGGTTTCGTAACAAGTTTCCAGCGTTAGCTCTATGTCTTATCACTGGACCAATGTGTTGTGAGGCTGTAGCTACACCGATCGTAATCATCAATAGCAATGAACGTATCCTCGACTTTAGGAATACTCATTTGTCGATTGAAGCAGGGTACACATATCTTTTTGATTTCCAAATGATAAAATTCGAAGATAATTTGGATGAAGCGCTTTCAGAAAATGAATGGAACCACGTGGAGATCACGTATTGGGACGCAAACAAGATCCCAATCCTTAAAGAAATCGGAATCCATGTGTTCAAACAGAAAAGTAGCATGCAGGATGTTCAATTAACCAATCCTTATAGAAAGAGAAAATTAGATGATGATCTCGATCAATAG 3147 0.367 MAESASSSSFNYGFAYDVFISFRGLDTRHGFTGNLYKALLNRGIHTFIDDEELQRGQEITPSLLKAIEESRIAIIVLSENYASSSFCLDELVKILDYNKGKDDRLVWPIFYCVDPSDVRKQTGTYGEALSIHKERFGDNNERLQKWRMALQQVANLSGWHFKLGDGYEYEFIEKIVERVSRKIKHAALPIADYPVGLESQVSEVNSLLDVGSDGVHMLGIYGIGGIGKTTLALAVYNLIADQFEGVCFLENVRENSNKYGLQYLQEILLTEILGEKKIKITSVRQGISIIQHRLQQKKVLLILDDVDKIQQLEAIIGGSKWLGFGSRVIITTRDKHLLSLHGVNKTYKVKKLNNKDALQLLTWKAFKMEKVDSSYMDVLDQAVTYASGLPLALVIIGSNLFGKTIEEWKSLLRQYESIPNKEIQEILKVSFNALQENEQSVFLDIACFYKGKVFRLVEDMLRAHYGDCMKYHIGVLVEKSLIKISWPPIVTLHDLIEDMGKEIVRQKSPKDPGKRSRLWNHKDIVQVLEENTGTRAIEMIYLEFGRCSENVIELDEMAFKKMKNLKTLIIKDGYFTKGPKHLPNSLRVLEWWRYPLEYLPSKFHPKKLSIFNLPKSCLTSVQLVDSIKKFVNVRNLNFDDTECLTQIPDVSSLPNLEIFSFQRCQNLITIHNSIGFLDKLKTLSASGCSKLRSFPAIKLISLEQLNLSFCSSLDSFPEILGKMENITELVLDESSIKELPCSFQNLVCLQTLQIRFCGMLKLPSSIFMMPKLIEIIAWRWDGWLFPNQDKGEENVSSMVSSNVECLRLFHCNLSDDFFSVGLKWFVNVKELMLPRTNITILPECIKEFRFLKNICLDYCPHLREIRGLPPNLEIFLARHCKSLTRTNMLLNQELHEAGNTMFYFPGARIPNWFEHQSKEGSVSFWFRNKFPALALCLITGPMCCEAVATPIVIINSNERILDFRNTHLSIEAGYTYLFDFQMIKFEDNLDEALSENEWNHVEITYWDANKIPILKEIGIHVFKQKSSMQDVQLTNPYRKRKLDDDLDQ. 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02936 1048 ProSiteProfiles TIR domain profile. 14 183 IPR000157 GO:0007165
Seca12g02936 1048 Gene3D - 13 179 IPR035897 -
Seca12g02936 1048 PRINTS Disease resistance protein signature 386 400 - -
Seca12g02936 1048 PRINTS Disease resistance protein signature 697 713 - -
Seca12g02936 1048 PRINTS Disease resistance protein signature 217 232 - -
Seca12g02936 1048 PRINTS Disease resistance protein signature 293 307 - -
Seca12g02936 1048 SMART AAA_5 214 352 IPR003593 GO:0016887
Seca12g02936 1048 Gene3D - 351 435 IPR042197 -
Seca12g02936 1048 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Seca12g02936 1048 Pfam TIR domain 15 185 IPR000157 GO:0007165
Seca12g02936 1048 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 159 IPR035897 -
Seca12g02936 1048 Pfam NB-ARC domain 199 434 IPR002182 GO:0043531
Seca12g02936 1048 SUPERFAMILY "Winged helix" DNA-binding domain 421 529 IPR036390 -
Seca12g02936 1048 Pfam C-JID domain 904 1005 IPR045344 -
Seca12g02936 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Seca12g02936 1048 Gene3D Ribonuclease Inhibitor 519 779 IPR032675 -
Seca12g02936 1048 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 718 IPR044974 GO:0006952
Seca12g02936 1048 Gene3D - 180 346 IPR027417 -
Seca12g02936 1048 SUPERFAMILY L domain-like 551 889 - -
Seca12g02936 1048 Gene3D Ribonuclease Inhibitor 788 900 IPR032675 -
Seca12g02936 1048 SMART till_3 15 156 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02936 Seca-Chr12 55881577 55885567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02936 10 772 WRKY Transcription Factor Family AT4G12020 32.739 3.37e-93 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02936 - - gmx:100780257 1294.64