Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02929 ATGGCAGAAGAGAGATTCACCGGCGTAGTGCAGTGGTTCAACAATGGCAAGGGTTTCGGCTTCATCAAGCCCGATGACGGAGGAGAGGATCTCTTCGTTCACCAATCCTCCATCAGATCCGACGGCTACCGCACTCTTCTAGAAGGCGATCGCGTCGAGTTCGCCATCGCCACCGGCGACAACGACAAGACCAAGGCCGTCGATGTCACCGGCCCCGACGGCGCTCCTCTCCAGTCCAGGAAGGACACCTACGGCGGTGGAGGTCGCGGCGGAGGCGGATTCGGCGGCGGATGGAGGGGCGGCGAGAGGCGCAACGGTGGCGGCGGAGGTGCTGGAGGTGCCGGCTGTTACCAGTGCGGCGACTTAGGGCACTTGGCCAGGGACTGCAACCGGAGCAATAACTCCGGTGCCGGCGCGTGCTTCAATTGTGGTGGCGGCGGTGGCGTTGGAAGCACGTCTTGCTTTAGGTGCGGCGGGTTCGGGCACATGGCAAGGGACTGCGCCACTGCCAAGGGCGGAAGCGGCGGTGGAATCAGCGGCGGAGGTTGTTTCCGATGCGGGGAAGTTGGTCACTTGGCTAGGGATTGCGGCATTGAAGGCGGAAGGTTTGGCGGTGGCAACAGCAGTGGTGGTGGCGGCAATGCAGGGAAAAGCAGCACGTGCTTTAATTGTGGTTCGAATTCAGCTACATTCACAATTGTGAACAAATGCAGCTACCCAGTTTGGCCGGGAATTTTGTCCGGCGCCGGAACGGCACAGCTGGAAACGACGGGATTCGCCTTGCAACCGGGAGAGTCCAACGCCGTCGCCGTGCCGGCGGCTTGGTCCGGCCGCCTATGGGGCCGAACGCTATGCTCTACTGACTCCACCGGAAAATTCTCCTGCGCGACGGGGGACTGCGGCTCCTCCAAAATGGAATGCGCCGGCAGCGGCGCAATCCCGCCGGCGACGCTCGCGGAGTTCACCTTGAACGGTGCGGGGGGAATGGATTTCTATGACGTCAGCCTGGTTGACGGTTACAACCTTCCCATGATGGTGGAGGCGCGTGGCGGTGGCGGAAACTGCACGACGACGGGTTGCATGGTGGACTTGAATGGAGGGTGTCCGGCGGAGCTTAAGGTGAAGATGGCGGCGGAGGGAGAGGGGAGTGGAGTGAAGAGCGTGGCTTGCAAGAGCGCGTGTGAAGCCTTTGGGGATCCACGGTATTGTTGCAGTGGCGCTTATGCAACACCTCAGACATGCAAGCCAAGCTCGTACTCGCAGTTCTTCAAGAGCGCGTGCCCACGCGCCTATAGCTACGCCTATGATGATGGCACTAGCACCTTCACTTGTGCCTCTGCGGATTACGTCATCACTTTCTGTCCTGCACCCTGCAAAAGTTCGATCAAGTCAGGGAATGGGAAATTCCCATTAGCAGTGGACTTCTCTGTAGGGCATGCCCACGTGGATGGGTCAGCCAATGTCATGGCGGTGGCTATTAACGCTGTTTTAGTGACAATTTGGTGGCAACTCAATTGA 1518 0.5982 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGPDGAPLQSRKDTYGGGGRGGGGFGGGWRGGERRNGGGGGAGGAGCYQCGDLGHLARDCNRSNNSGAGACFNCGGGGGVGSTSCFRCGGFGHMARDCATAKGGSGGGISGGGCFRCGEVGHLARDCGIEGGRFGGGNSSGGGGNAGKSSTCFNCGSNSATFTIVNKCSYPVWPGILSGAGTAQLETTGFALQPGESNAVAVPAAWSGRLWGRTLCSTDSTGKFSCATGDCGSSKMECAGSGAIPPATLAEFTLNGAGGMDFYDVSLVDGYNLPMMVEARGGGGNCTTTGCMVDLNGGCPAELKVKMAAEGEGSGVKSVACKSACEAFGDPRYCCSGAYATPQTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASADYVITFCPAPCKSSIKSGNGKFPLAVDFSVGHAHVDGSANVMAVAINAVLVTIWWQLN. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02929 505 Gene3D - 109 148 - -
Seca12g02929 505 Gene3D - 177 233 - -
Seca12g02929 505 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Seca12g02929 505 PRINTS Pathogenesis-related protein signature 278 289 IPR001938 -
Seca12g02929 505 PRINTS Pathogenesis-related protein signature 230 242 IPR001938 -
Seca12g02929 505 PRINTS Pathogenesis-related protein signature 445 454 IPR001938 -
Seca12g02929 505 PRINTS Pathogenesis-related protein signature 330 346 IPR001938 -
Seca12g02929 505 ProSiteProfiles Thaumatin family profile. 228 455 IPR001938 -
Seca12g02929 505 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Seca12g02929 505 SMART tha2 231 455 IPR001938 -
Seca12g02929 505 SMART csp_8 7 72 IPR011129 GO:0003676
Seca12g02929 505 PANTHER OS03G0233200 PROTEIN 228 455 IPR001938 -
Seca12g02929 505 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Seca12g02929 505 Gene3D - 149 176 - -
Seca12g02929 505 MobiDBLite consensus disorder prediction 65 102 - -
Seca12g02929 505 SUPERFAMILY Retrovirus zinc finger-like domains 105 147 IPR036875 GO:0003676|GO:0008270
Seca12g02929 505 CDD TLP-PA 230 454 - -
Seca12g02929 505 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Seca12g02929 505 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Seca12g02929 505 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Seca12g02929 505 ProSiteProfiles Zinc finger CCHC-type profile. 183 196 IPR001878 GO:0003676|GO:0008270
Seca12g02929 505 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Seca12g02929 505 ProSiteProfiles Zinc finger CCHC-type profile. 154 167 IPR001878 GO:0003676|GO:0008270
Seca12g02929 505 ProSiteProfiles Zinc finger CCHC-type profile. 116 129 IPR001878 GO:0003676|GO:0008270
Seca12g02929 505 Gene3D Thaumatin 234 455 IPR037176 -
Seca12g02929 505 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Seca12g02929 505 Gene3D - 1 83 IPR012340 -
Seca12g02929 505 SMART c2hcfinal6 115 131 IPR001878 GO:0003676|GO:0008270
Seca12g02929 505 SMART c2hcfinal6 182 198 IPR001878 GO:0003676|GO:0008270
Seca12g02929 505 SMART c2hcfinal6 153 169 IPR001878 GO:0003676|GO:0008270
Seca12g02929 505 Pfam Thaumatin family 235 455 IPR001938 -
Seca12g02929 505 FunFam THAUMATIN-LIKE PROTEIN 1 229 455 - -
Seca12g02929 505 SUPERFAMILY Retrovirus zinc finger-like domains 147 197 IPR036875 GO:0003676|GO:0008270
Seca12g02929 505 Pfam Zinc knuckle 182 196 IPR001878 GO:0003676|GO:0008270
Seca12g02929 505 Pfam Zinc knuckle 154 168 IPR001878 GO:0003676|GO:0008270
Seca12g02929 505 Pfam Zinc knuckle 115 129 IPR001878 GO:0003676|GO:0008270
Seca12g02929 505 SUPERFAMILY Osmotin, thaumatin-like protein 229 455 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02929 Seca-Chr12 55414942 55423496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02929 219 455 Receptor kinase-like Gene Family AT5G38280 54.583 1.53e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Seca12g02929 Thaumatin 6.1e-84 CL0293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02929 - - gmx:100809419 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02929 12 55414942 55423496 Seca12g02929 12 55414942 55423496 ECH