Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02916 ATGCTCTCAGCATCCTTTCCTGCAGGACCTTTCACCACCACTGCCTCTTTCTCCGACAAAGCCGTCTCTTGGCCGCCGCGCCACGTCAGATCCCGGCCAGTACTCTCCTTCGCCATCGCTACCGCCACCGAAGCTAGCTCTACTTGGACGGAGCAGCAACAACCGAGGCCTGCGTATCTGAATCCCCACGACATGGCTTCCTGCAAGTCGCTTTACGAAATTCTCGGAATCGCCGCCGCCGCGTCGAACCAGGAAATCAAGGCGGCGTACCGGCGACTAGCCAGGATGTGCCACCCTGACGTGGCGGTGGTCGGTCAGAAGGACTCGTCAGCGGGCGAGTTCATGAAGATCCATGCTGCATACTCCACCCTATCGGATCCCGAGAAACGCGCCAGCTACGACAGAAGCTTATTCCAGCGGCGTCGGCAACCGCTGACGACGACGGCGTCGAGATTTTCCGGCTATGCCGGTCGGAAATGGGAAACGGACCAGTGCTGGTAG 501 0.5988 MLSASFPAGPFTTTASFSDKAVSWPPRHVRSRPVLSFAIATATEASSTWTEQQQPRPAYLNPHDMASCKSLYEILGIAAAASNQEIKAAYRRLARMCHPDVAVVGQKDSSAGEFMKIHAAYSTLSDPEKRASYDRSLFQRRRQPLTTTASRFSGYAGRKWETDQCW. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02916 166 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 34 166 - -
Seca12g02916 166 CDD DnaJ 72 126 IPR001623 -
Seca12g02916 166 Pfam DnaJ domain 71 134 IPR001623 -
Seca12g02916 166 ProSiteProfiles dnaJ domain profile. 70 137 IPR001623 -
Seca12g02916 166 SUPERFAMILY Chaperone J-domain 25 133 IPR036869 -
Seca12g02916 166 SMART dnaj_3 69 129 IPR001623 -
Seca12g02916 166 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Seca12g02916 166 Gene3D DnaJ domain 59 154 IPR036869 -
Seca12g02916 166 PRINTS DnaJ domain signature 72 90 IPR001623 -
Seca12g02916 166 PRINTS DnaJ domain signature 90 105 IPR001623 -
Seca12g02916 166 PRINTS DnaJ domain signature 109 129 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02916 Seca-Chr12 55101322 55101822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02916 72 134 C2H2 Transcription Factor Family AT1G74250 43.939 2.48e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02916 - - aip:107642575 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02916 12 55101322 55101822 Seca12g02916 12 55101322 55101822 ECH