Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02904 ATGCGAACGCTTTGTGATGCATGTGAGAGCGCCGCCGCTATCGTTTTTTGCGCCGCCGATGAGGCTGCGCTCTGCCGTGCCTGCGACGAGAAGGTTCATATGTGTAATAAGCTAGCTAACCGGCATGTAAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCTCGCTGTGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATGGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCTGGAGATAAACCTGGTCATGCAGAAAACCCAGCTGAGACTAAAAGAGGACAAAATCCACTGCCCAAAATGAAAATGGGAGAAAAACAAGAAAATCACAGGATGCCTCTGGTTCTGATGCCAGAACCTGAGACTGATGGGCATGCCACCAGGGAAACTAAATTGATTGATTTGAACATGAGGCCTCAGAGAATACATGAACAAACACCAAACAATCAGCCATAA 534 0.4588 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLANRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQRVEFPGDKPGHAENPAETKRGQNPLPKMKMGEKQENHRMPLVLMPEPETDGHATRETKLIDLNMRPQRIHEQTPNNQP. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02904 177 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca12g02904 177 MobiDBLite consensus disorder prediction 105 137 - -
Seca12g02904 177 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Seca12g02904 177 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Seca12g02904 177 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca12g02904 177 SMART bboxneu5 51 96 IPR000315 GO:0008270
Seca12g02904 177 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Seca12g02904 177 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Seca12g02904 177 CDD Bbox1_BBX-like 56 96 - -
Seca12g02904 177 Gene3D Classic Zinc Finger 2 91 - -
Seca12g02904 177 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 138 - -
Seca12g02904 177 FunFam B-box zinc finger protein 19 2 92 - -
Seca12g02904 177 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02904 Seca-Chr12 54574969 54578007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02904 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 60.989 2.79e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca12g02904 zf-B_box 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02904 - - gmx:100780544 331.257