Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02900 ATGCCTACTCTTCTTCTCCTCATGCTACTGTGCGCACCCTTCATATCATGCGCCCAGTGCAGCTCCGTCACGGAGATCCAAGCCTTAACGTCGTTCAAGCTCAACCTCCACGATCCTCTCGGCGCGCTTAACGGTTGGGACCCGTCAACGCCAGCGGCTCCATGCGACTGGCGTGGCGTTTCATGCAAAAACGACCGAGTCACGGAACTGGGCTTGCCTCGCCTTCAACTCGGTGGACGACTCAGTGACCGTATTTCCGACCTGCGCATGCTTCGGAGGCTGAGCCTGCGTTCCAACTCCTTCAACGGTACTATTCCCCCATCGCTTTCCAAATGCACGCTCCTACGCGCAGTGTTTTTGCAGGACAACTCACTCTCCGGTGAACTCCCGCTGGATATCGGAAACCTCGCCGGCCTTCAGTTTCTCAACGTCGCCGGAAACAATCTCTCCGGTATAATCCCTGGTGAACTCCCTCTCGGTTTGAAATACGTTGACCTCTCCGCGAACGCCTTCTCCGGTGAGATTCCAAGCACCATTGCTAGTCTTTCTCAGGTTCAGCTTATCAACCTATCGTACAATCAGTTCTCCGGCCAGATTCCGGCGAGCATCGGAGTGCTTCAGAACCTGCAGTACCTCTGGCTCGATCACAACTTTCTCGGAGGAACCCTACCTTCGGCCCTAGCTAATTGTACTTCTCTCGTGCATCTGAGCGCGGAAGGGAACACTCTCACCGGCGTTTTGCCGGCAGCGATTTCGGCTCTCCCGAAGCTTCAAGTGTTATCCCTTGCGCAGAACAATCTCACCGGTTCCGTTCCAGCTTCTATTTTCTGCAACGCGCAGTCGCTTCACGTTGTTCAACTAGGGTTTAACGGTTTCACTGATTTCGCAGCGCCTCAGACTGCAACGTGTTTCAGCGCTCTTGAGGTTTTGGAAATTCAGAGCAATCGCGTGCGTGGCAAGTTTCCGTTGTGGTTAACCAATGTGACCTCCTTGTCGGTGCTCGATGTTTCCGGCAATGCTCTTTCTGGTGAGATTCCACCGGAAATCGGTAAGCTCCAGAAATTGGAGGAGTTGAAGATGGCAAACAATTCATTCACCGGCGTGATTCCGCCGGAGATCGAGAAATGTGGTTCTCTGCTTGTTGTTGATTTCGAAGGTAACCGTTTTTCCGGTGAAGTTCCTTGGTTTTTTGGTCATCTGACAGGGCTGAAGGTTCTGTCACTTGGCGGGAATCGCTTCTCTGGTTCGGTTCCGGTGAGTTTTGGTAACCTTGCATCTCTTGAAACCTTGAGTTTGAAGGGTAATAGCTTGAATGGTAGTATGCCAGAGGTGGTAATGGGGTTGAGGAATTTGACAACACTGGACCTTAGTGGAAACAAGTTTTCAGGTCATGTTTCCGGTAGAATTGGGAATTTGAGTAGATTGATGGTTCTGAATTTGAGTGGCAATGGCTTCTCTGGAGAAATTCCTGCTAGCTTGGGGAATCTTTTAAGGCTAACTACACTTGACTTGAGCAAACAGAATCTCTCTGGTGAATTACCATTTGAGCTTTCGGGGTTACCCGGTTTGCAGGTTATTGCTCTGCAAGAGAATAAGTTATCTGGGGATGTCCCTGAAGGGTTTAGCAGCTTGACAAGTTTGCAATATGTGAACCTAAGCTCTAATGAGTTTTCTGGCCATATTCCTAAAAGTTATGGCTTTCTTCCATCGTTGGTTGTTCTTTCATTATCTGATAACCACATTACAGGAATGATTCCTCCGGAAATTGGAAACTGCTCTGAAATTGAAATCCTTGAGCTTGGGTCAAATTCTTTGGCAGGTCCTATTCCCTCTGATCTGTCTGGCCTTGTCCATTTGAAAGTGCTTGATTTGAGTTGGAACAATTTATCTGGAGATATGCCTGAGGGCATCTCCAAATGCTTGTGGTTAACTGTTTTGTTAGCTGATCACAACCATCTTTCAGGTGCTATACCAGAGTCACTGGCAGAGCTATCAAACCTAACAATGCTGGACCTCTCTGCAAACAAATTGAGTGGGGGAATTCCCAGTAATCTATCTATGATCCCTGATTTGGTGTACTTCAATGTTTCGGGTAATAAACTGGAAGGTGAGATACCACCAATGTTGGGTTCTAGGTTCAAAGACCCCTCTGTATTTGCAGATAATCAGAATTTATGTGGGAACCCATTGGATAGGAAGTGCACCGAGATAGATAATAGAGACAGAAAGAGGTTGATTGTGTTGATTATTATCATTGCAGTTGGAGCTTGTTTACTTGCATTGTGCTGTTGCTTCTACATTTTCAGTCTATTGAGATGGCGCAAAAGGCTTAAAGCAGCTGTGTCTGGAGAAAAGAAAAAGAGTCCTAGGAGTTCTGGAACGAGTCGAGGTCGTGGCAGCATTGATAACGGTGGACCAAAACTTATCATGTTCAATACCAAAATCACACTTGCTGAAACAATGGAAGCAACTAGGAATTTCGACGAAGAGAATGTGCTGAGCAGAACAAAGTATGGATTAGTTTTCAAAGCTTGCTACAACGACGGAATGATTCTATCTATTCGCAGGCTCCCAGATGGATCACTCGATGAAAACATGTTCAGAAAAGAAGCTGAATCACTGGGGAAAATCAAGCACAGGAACCTAACCGTTCTCAGAGGCTACTACGCTGGGCCACCAGATATGAGACTCTTAGCCTACGATTACATGCCCAATGGAAACCTTGCAACGCTCCTCCAAGAAGCATCTCACCAAGATGGCCATGTTCTGAATTGGCCAATGCGACACCTCATCGCACTAGGAATTGCCCGTGGCTTAGCATTTCTGCACCAATCCTTGATGGTCCATGGTGACATGAAGCCACAGAATGTGTTGTTCGATGCAGATTTCGAAGCCCATTTATCAGATTTTGGGCTAGACCCGTTAACAGTACTAGCCAACCCAATTGAAGCCTCCACTTCAACTTCAGTTGGCACATTGGGTTACGTCTCACCAGAAGCAGTGTTAACAGGGGAAGCCACAAAGGAGTCTGACGTGTACAGCTTTGGCATTGTGATGTTGGAGCTTCTCACTGGGAAGAAACCAGTGATGTTCACAGAGGACGAGGACATAGTAAAGTGGGTAAAGAAACAGCTACAGAAAGGTCAAATAACGGAGCTACTAGAGCCTGGTTTGCTTGAGCTGGACCCAGAATCTTCTGAGTGGGAAGAGTTCTTGCTGGGTGTGAAAGTTGGGTTGCTTTGCACAGCACCAGACCCTCTTGATCGACCACCCATGTCTGACATAGTCTTCATGCTCGAAGGTTGCCGTGTTGGACCTGATATCCCATCCTCCGTGAATCCCACCACTCAACCTTCTCCAGCATAG 3366 0.4762 MPTLLLLMLLCAPFISCAQCSSVTEIQALTSFKLNLHDPLGALNGWDPSTPAAPCDWRGVSCKNDRVTELGLPRLQLGGRLSDRISDLRMLRRLSLRSNSFNGTIPPSLSKCTLLRAVFLQDNSLSGELPLDIGNLAGLQFLNVAGNNLSGIIPGELPLGLKYVDLSANAFSGEIPSTIASLSQVQLINLSYNQFSGQIPASIGVLQNLQYLWLDHNFLGGTLPSALANCTSLVHLSAEGNTLTGVLPAAISALPKLQVLSLAQNNLTGSVPASIFCNAQSLHVVQLGFNGFTDFAAPQTATCFSALEVLEIQSNRVRGKFPLWLTNVTSLSVLDVSGNALSGEIPPEIGKLQKLEELKMANNSFTGVIPPEIEKCGSLLVVDFEGNRFSGEVPWFFGHLTGLKVLSLGGNRFSGSVPVSFGNLASLETLSLKGNSLNGSMPEVVMGLRNLTTLDLSGNKFSGHVSGRIGNLSRLMVLNLSGNGFSGEIPASLGNLLRLTTLDLSKQNLSGELPFELSGLPGLQVIALQENKLSGDVPEGFSSLTSLQYVNLSSNEFSGHIPKSYGFLPSLVVLSLSDNHITGMIPPEIGNCSEIEILELGSNSLAGPIPSDLSGLVHLKVLDLSWNNLSGDMPEGISKCLWLTVLLADHNHLSGAIPESLAELSNLTMLDLSANKLSGGIPSNLSMIPDLVYFNVSGNKLEGEIPPMLGSRFKDPSVFADNQNLCGNPLDRKCTEIDNRDRKRLIVLIIIIAVGACLLALCCCFYIFSLLRWRKRLKAAVSGEKKKSPRSSGTSRGRGSIDNGGPKLIMFNTKITLAETMEATRNFDEENVLSRTKYGLVFKACYNDGMILSIRRLPDGSLDENMFRKEAESLGKIKHRNLTVLRGYYAGPPDMRLLAYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSLMVHGDMKPQNVLFDADFEAHLSDFGLDPLTVLANPIEASTSTSVGTLGYVSPEAVLTGEATKESDVYSFGIVMLELLTGKKPVMFTEDEDIVKWVKKQLQKGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPPMSDIVFMLEGCRVGPDIPSSVNPTTQPSPA. 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02900 1121 SMART serkin_6 827 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02900 1121 Gene3D Ribonuclease Inhibitor 22 158 IPR032675 -
Seca12g02900 1121 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 613 734 - -
Seca12g02900 1121 MobiDBLite consensus disorder prediction 784 805 - -
Seca12g02900 1121 SUPERFAMILY RNI-like 69 392 - -
Seca12g02900 1121 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 903 1107 - -
Seca12g02900 1121 SUPERFAMILY RNI-like 358 734 - -
Seca12g02900 1121 SUPERFAMILY Protein kinase-like (PK-like) 809 1112 IPR011009 -
Seca12g02900 1121 Gene3D Ribonuclease Inhibitor 300 377 IPR032675 -
Seca12g02900 1121 Gene3D Ribonuclease Inhibitor 378 446 IPR032675 -
Seca12g02900 1121 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 22 181 - -
Seca12g02900 1121 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 514 609 - -
Seca12g02900 1121 ProSiteProfiles Protein kinase domain profile. 827 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02900 1121 Pfam Leucine rich repeat 402 461 IPR001611 GO:0005515
Seca12g02900 1121 Pfam Leucine rich repeat 498 556 IPR001611 GO:0005515
Seca12g02900 1121 Pfam Leucine rich repeat 569 629 IPR001611 GO:0005515
Seca12g02900 1121 Pfam Leucine rich repeat 208 267 IPR001611 GO:0005515
Seca12g02900 1121 Gene3D Ribonuclease Inhibitor 447 737 IPR032675 -
Seca12g02900 1121 Gene3D Ribonuclease Inhibitor 159 299 IPR032675 -
Seca12g02900 1121 Gene3D Phosphorylase Kinase; domain 1 806 902 - -
Seca12g02900 1121 Gene3D Transferase(Phosphotransferase) domain 1 903 1107 - -
Seca12g02900 1121 PRINTS Leucine-rich repeat signature 664 677 - -
Seca12g02900 1121 PRINTS Leucine-rich repeat signature 619 632 - -
Seca12g02900 1121 FunFam Uncharacterized protein 254 466 - -
Seca12g02900 1121 SMART LRR_typ_2 472 496 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 520 543 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 616 640 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 664 695 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 400 423 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 88 112 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 254 278 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 448 471 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 136 159 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 206 230 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 424 447 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 328 352 IPR003591 -
Seca12g02900 1121 SMART LRR_typ_2 568 592 IPR003591 -
Seca12g02900 1121 ProSitePatterns Serine/Threonine protein kinases active-site signature. 947 959 IPR008271 GO:0004672|GO:0006468
Seca12g02900 1121 FunFam Putative LRR receptor-like serine/threonine-protein kinase 790 902 - -
Seca12g02900 1121 Pfam Protein kinase domain 835 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02900 1121 SMART LRR_sd22_2 254 281 - -
Seca12g02900 1121 SMART LRR_sd22_2 664 687 - -
Seca12g02900 1121 SMART LRR_sd22_2 206 229 - -
Seca12g02900 1121 SMART LRR_sd22_2 616 639 - -
Seca12g02900 1121 SMART LRR_sd22_2 400 426 - -
Seca12g02900 1121 SMART LRR_sd22_2 448 474 - -
Seca12g02900 1121 PANTHER UNNAMED PRODUCT 300 1032 - -
Seca12g02900 1121 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02900 Seca-Chr12 54301110 54304475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02900 4 1121 Receptor kinase-like Gene Family AT4G36180 67.905 0.0 1474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Seca12g02900 Pkinase 3.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02900 - - gmx:100784869 1764.2