Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02898 ATGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACCGATGGAGAGCTAGTTGGTTATTATCTCAGGAAGAAAGTAGCTTCTCAGAAGATTGATCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGAATGAGGAGCAGAATGAGTGGTATTTCTTTAGCCACAAAGATAAGAAGTATCCAACTGGGACAAGAACTAACAGAGCTACGACTACAGGGTTCTGGAAAGCTACAGGAAGAGACAAGTCAGTGTATGAAAGGACAAAACTCATTGGTATGAGGAAAACTCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACGGATTGGATCATGCATGAGTATAGGCTTGAAACTGTAGAGAATGCACCTCCACAGGAGGAAGGATGGGTTGTATGCAGAGCATTCAAAAAAAGAACTAACAGCCAAACAAAGAGTATTGAAGGATGGGATCCAAGTTACTTACATGATGAACAAGCAAGTGGTGTAAGTACCTCCATGATGGACCCAATTGATCTCATCTTAAGGCAACCTCAAAGGAATATTTCACCTCAAAATTTCTTGTACAAGCAAGAGATCATAGAAACAGATAATAACATAGGCTTCATGCATCCAGAGCAATTAATACAACTTCCTCAGCTAGAAAGTCCCTCTTTGCTAAAGAGGCAACAAATTAACGATGATGATCAAAATGTAGGGTTATCCAACACAGAGAAAGTGACTGATTGGAGGGCTCTTGACAAGTTTGTGGCTTCTCAATTGAGTCAAGAACACAGGCATGAAACAGATGATGGAGTAGAGTCAAGCTTTGCAAGCCATATTCATAACAGCTCAGACATGGCATTGATGCTATTGCAGAGTAGTAGGGATGAAGGGAATAAGTTAATAAGCCCGTTTTTTAATTCAAGCTCAGACTGTGACTTTGGGATATGCGTATTTGATAAATGA 999 0.4104 MMESCVPPGFRFHPTDGELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGNEEQNEWYFFSHKDKKYPTGTRTNRATTTGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENAPPQEEGWVVCRAFKKRTNSQTKSIEGWDPSYLHDEQASGVSTSMMDPIDLILRQPQRNISPQNFLYKQEIIETDNNIGFMHPEQLIQLPQLESPSLLKRQQINDDDQNVGLSNTEKVTDWRALDKFVASQLSQEHRHETDDGVESSFASHIHNSSDMALMLLQSSRDEGNKLISPFFNSSSDCDFGICVFDK. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02898 332 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Seca12g02898 332 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Seca12g02898 332 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Seca12g02898 332 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 246 - -
Seca12g02898 332 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Seca12g02898 332 FunFam NAC domain-containing protein 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02898 Seca-Chr12 54236135 54239798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02898 2 331 NAC Transcription Factor Family AT2G18060 59.673 8.77e-145 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g02898 NAM 7.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02898 - - aprc:113869508 504.597