Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02894 ATGAGAACTCGAAATGCCGATTCTTCCGCCAAATCCGCAACCCCGAAGAAGACACCGCCGGCGAGGAAATCCGCCACTAAATCCGCCGGAGAATCCCCTGCGGCAAAGCGCACGCCTGCCTCCAAAACAAGAAACGTGAAGAAGACGGAGGCATCGCCCACACCCGACCCGATATCCGATTCCAATCCTGATCAATCTCCTCAGGGGCAGAAACCTGTGAAGAAGAGGGCACCAGGGAGACCGAGAACTAAAACGGTTGCCACTCCAAATTTGGTAGCAGCTGATGAAACTCCAATTATTGATAATTCTGAGGTAGAAGAGAAAGTGGAAGAACCTGGAGGTGTTGAAATTGTCAATGCAGATAATAATGAGAGTGAGAAAGAAGGGGAACAAGGTGTTGGGTCTGTTGGATTATCTGATGAGAAGGAACAGAAGTCCATGGAAGTGGATGAACCTGTTGTAAAAGAAGTTTGTGAATCGGGTGATAAGGGAAAGAGCATAGTTGGGGTTGAGGAGGAACAGAAGTCCATGGAAGTGGATGAACCTGTTGTTGAAGAAGCTTGTGAATCAGCCGCCGATAAGGGAAAGAGCATAATGGAAGTTGAGAAGGAACAGAAGTCCATGGAATTGGATGAACCTGTTGTTGAAAAAGTTTGTGAATCGGCTAATGAGGGAAAGAGCATAGTGGATGTTGAAGGAACTGCTTTGCAGGATGCTTCTGTTTCTTTTAAGCGACCAGGACGTACTATTGTGGACCTCAATATATCTGTGGCTGATAATGAAGATTCTACTGGTGCAAAGGAGGGAGAGGAAGAGTTGAAAGAACTGGGGGAAGAAAAAGGAAAGGAAGAGTTGAAAGAACGGGAAGGAGAGAAAGGAAAGGAAGGAATTAATGAACAGCAAGGAGAGAAAGGAAAGGAAGAGTTGATGGAACAGGAAGGAGAGAAAAGAAAAGAAGATTTGAAAGAACAGGAAGGAGAGAAAGGAAAAGAAGATTTGAAAGAACAAGGAGAGAAAGTAAATAAAGAGTTGAAGGAACAGGAAGGAGAGAAAGGAACTGAAGAGTTGGAGAAACAGGAAGGAGAGAAAGGAAGGGAAGAGTTGGAGAAACAGGAAGGAGAGAAAGGAAGGGAAGAGTTGGAGAAACAGGAAGGAGAGAAAGGAAAGGAAGAGTTGAAGGAACAGGAAGGAGAGAAAGGAAGTGAAGAGTTGAAAAAACAGGGTCTAGAAAAAGAAAAGGGAGAAGAAACAACCATTATTGGACATGAAGAGCAGTCTAAGACTGAGTCTTTCAGTGTAGAAGTAAAAGCCCAGTTGAAAAAAGATGTTAATCTTGAAAAAGATGGTGATGAAGGAGAAAAGAGTAGTGAAAAGTTACATCTTGGAGAACAAGAGAGGGAGGAGTCTGTTGAAGAAGATCCGGAGGAACCTCCAGAAGAAACTGAGACATTGGTGGAGGAGCATATGGAATTGGAGGCAATTGCAAAACAGCGAAAGATTAAGAAAGAACATGAAATATTTGTTGGTGGACTGGATCGTGATGCTACAGAGGAAGATCTGAAAAAGGTTTTTCAGAGGATTGGGGAGGTAGTTGAAGTCAGGTTACATAAAAATTCTTCAACAAATAAAAATAAGGGCTATGCTTTTGTAAAGTTTGCTAATAAGGAACATGCCAAGAAAGCTTTGTCTGAAATGAAGAATCCTGTTATAAATGGAAAACGATGTGGCACTGCTCCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACATGGACAAAAGAAGCTATTAAACAGAAGTTGAAGGATTATGGTGTTGAAGGGGTTGAAAACATTACTCTTGTCCCAGATGCTCAACATGAAGGCTTGAGCCGGGGCTTTGCATTCCTTGAGTTCTCTTGTCATGGTGATGCCATGCTTGCATACAAGAGGCTTCAAAAGCCTGATGTCATCTTTGGCCATACTGAGCGAACTGCCAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGTCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCTCACTGGGACGAAGATCATGTGAGGGAGCTGTTAAAATCTTATGGTGAAATTGTAAGAATTGTTTTAGCACGGAACATGTCTACAGCTAAAAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTGGATGGTGTAAATAAATCAGAATTGGGTGACGTGGCATCAAAGGTAAAAGTGAGAGCTAGGCTTTCAAATCCTTTACCTAAAACACAGGCTGTCAAGGGTGGCATGTGTGGTGGGTTTCGAATTGGTCATTCTAGGAGTGGAGCCTTTCCAAGATCTGGAAGGGGTTTTGGGCGGGGAAGACAGCCCTTCAACAACTGGGGAAATTTCAACAGGGACAGGAGTTTCTATCACGGTGGACACAGCCAAATTGGAAGGACGGGTTTTCGGGATGACCTTGATTTTAATATGTATCCAGATTTCCGTCAGAGGCAATTTGGTCCACAAGGAGCTATGAGGGGTGGGCATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGTCCATCTAGACCTTATCATGATAGAGCATGGTATGGTATCCCTGATGGCGCCCCTAGTGAGCCTATTCCTCCAAGAAGGCCCTACTCCCCTGGTGGACAGTTTGATGCGCCTCTTATGGGAAGGCATTTTGAAGATCCATATCTATATGATGACAATATGCATGGCACGAAACGTCCATTTTATATGACTGACCCTGAACCTGACTACATGGGGCCTAATAGACTTCGCCCCCGATTGGATTATGCAGATCCATCTATATTTCGTGGAACTCGTTACAATGATTCTTTTGGGGCTGGCAGCAGACATTATCCACATGACTATTATGGTTCTGATTATGGTGGAGGTCCATACTCATCTTTTTATGGGGGCGATGCCTCACATGGGCATGGATACTATTATTAG 3000 0.438 MRTRNADSSAKSATPKKTPPARKSATKSAGESPAAKRTPASKTRNVKKTEASPTPDPISDSNPDQSPQGQKPVKKRAPGRPRTKTVATPNLVAADETPIIDNSEVEEKVEEPGGVEIVNADNNESEKEGEQGVGSVGLSDEKEQKSMEVDEPVVKEVCESGDKGKSIVGVEEEQKSMEVDEPVVEEACESAADKGKSIMEVEKEQKSMELDEPVVEKVCESANEGKSIVDVEGTALQDASVSFKRPGRTIVDLNISVADNEDSTGAKEGEEELKELGEEKGKEELKEREGEKGKEGINEQQGEKGKEELMEQEGEKRKEDLKEQEGEKGKEDLKEQGEKVNKELKEQEGEKGTEELEKQEGEKGREELEKQEGEKGREELEKQEGEKGKEELKEQEGEKGSEELKKQGLEKEKGEETTIIGHEEQSKTESFSVEVKAQLKKDVNLEKDGDEGEKSSEKLHLGEQEREESVEEDPEEPPEETETLVEEHMELEAIAKQRKIKKEHEIFVGGLDRDATEEDLKKVFQRIGEVVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVINGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVENITLVPDAQHEGLSRGFAFLEFSCHGDAMLAYKRLQKPDVIFGHTERTAKVAFAEPIREPDPEIMSQVKSVFINGLPPHWDEDHVRELLKSYGEIVRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDVASKVKVRARLSNPLPKTQAVKGGMCGGFRIGHSRSGAFPRSGRGFGRGRQPFNNWGNFNRDRSFYHGGHSQIGRTGFRDDLDFNMYPDFRQRQFGPQGAMRGGHYAGSRGAAFAGPSRPYHDRAWYGIPDGAPSEPIPPRRPYSPGGQFDAPLMGRHFEDPYLYDDNMHGTKRPFYMTDPEPDYMGPNRLRPRLDYADPSIFRGTRYNDSFGAGSRHYPHDYYGSDYGGGPYSSFYGGDASHGHGYYY. 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02894 999 Coils Coil 266 286 - -
Seca12g02894 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 584 669 IPR000504 GO:0003723
Seca12g02894 999 Coils Coil 330 350 - -
Seca12g02894 999 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 299 999 - -
Seca12g02894 999 MobiDBLite consensus disorder prediction 263 467 - -
Seca12g02894 999 MobiDBLite consensus disorder prediction 1 182 - -
Seca12g02894 999 FunFam Heterogeneous nuclear ribonucleoprotein Q 459 578 - -
Seca12g02894 999 MobiDBLite consensus disorder prediction 255 484 - -
Seca12g02894 999 MobiDBLite consensus disorder prediction 468 484 - -
Seca12g02894 999 FunFam Heterogeneous nuclear ribonucleoprotein Q 584 668 - -
Seca12g02894 999 MobiDBLite consensus disorder prediction 141 182 - -
Seca12g02894 999 Gene3D - 422 579 IPR012677 -
Seca12g02894 999 Gene3D - 671 825 IPR012677 -
Seca12g02894 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 684 750 IPR000504 GO:0003723
Seca12g02894 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 586 656 IPR000504 GO:0003723
Seca12g02894 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 574 IPR000504 GO:0003723
Seca12g02894 999 SUPERFAMILY RNA-binding domain, RBD 673 787 IPR035979 GO:0003676
Seca12g02894 999 MobiDBLite consensus disorder prediction 45 69 - -
Seca12g02894 999 Coils Coil 392 412 - -
Seca12g02894 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 504 582 IPR000504 GO:0003723
Seca12g02894 999 SUPERFAMILY RNA-binding domain, RBD 505 649 IPR035979 GO:0003676
Seca12g02894 999 Coils Coil 363 383 - -
Seca12g02894 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 682 764 IPR000504 GO:0003723
Seca12g02894 999 CDD RRM_SF 506 575 - -
Seca12g02894 999 SMART rrm1_1 585 662 IPR000504 GO:0003723
Seca12g02894 999 SMART rrm1_1 683 756 IPR000504 GO:0003723
Seca12g02894 999 SMART rrm1_1 505 578 IPR000504 GO:0003723
Seca12g02894 999 FunFam Heterogeneous nuclear ribonucleoprotein Q 669 820 - -
Seca12g02894 999 CDD RRM_SF 684 758 - -
Seca12g02894 999 Gene3D - 583 668 IPR012677 -
Seca12g02894 999 MobiDBLite consensus disorder prediction 6 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02894 Seca-Chr12 54165260 54169924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02894 506 750 Eukaryotic Initiation Factors Gene Family AT2G23350 24.206 2.14e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02894 - - gmx:100819035 972.615