Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02893 ATGTGCTGTCACTGCACTCCACCCTCCGCATACAAGATTTCCCTATTTTCACGCACCCCACCACCGTCACCCAACGTAACTTCTCCTTCTCCTCAATTTATATTGAAAAGATTAATCTCTCTCTGCTCCCATTCATCGTCAATTGCGATTTTTCGGATACCTGTTCCCAAGTCGATTGTAAATCTGAGTGTGCTTTATTTTCTTTCATCTTCGATCTCTTTGAGATTTAATATGAGGCGAACGCGGAAATTCAACAGGGTTTCGTGGGCTACTGGTGGTAATCTGTGTCAGGTAAAATTGTTCTTGTCTGAGGATTACCCCTCAAAAGTTGGCCAGAAATTGCCAGATCATCTTCAAGCAAAGATATCATCAACATTACACTCTAGTACTAATGAATCTGATGATTTGCCCCCTGGGTTTGAAAGCAGTCATTTCCTGAACCGACGGAAGGTTGAATTCTCCCACATTTCCCAGATAAAATGGGAACGTCCTCCCCGGCTTGTTTTCAGTTCTCACTGGCGTGTTGCAGCTGGTGAAGAAAGTAGGGAGAGAGAGGCTCAGAAGCTGAGAGAAATGAAAGTGCTTGAAGCAGTTTATCCCCGTATTTCTGCCATTCCTCCTAGCCCTTCTGTTTCCTTGGATGTAGAAGAGGAAGATTATGATGATAACATTACTCCTCTCGTCTCTATCATTCCCATTGAGGAGGAAGAGTCTATCAATTCCGTAACATTACCCCACAATGTGCAGTCACAGAACTTGCAGCAATATATATCAGCAATGACTCCAATTAGTTCAGACTGCAACACCTCCCATACTGTTTCCTTTGATGCCTGTGGAGCGCTCATATCTGGGGGGGTATCTCTTGGTTCGGAAGCAGACTTAGCAGCAGCTTCAGCTATTGTAGCAGCCATCGTGAAGAGTAATGAGCAAGGGAGGTTAGTAGATATGGATCTACTGGTTGAAATATTTAATGACCCAAAAATGATTGAGAAATTGACTAAAGAAAATAGAATTGCAACCACCACTGTAAGTGCATCCTCAAAAGCTGTGGATATACCCTCTTCTGGATCAAAACCTGCTATTCCATCCGTTTCATTGTTGAATCCTACACCTGATAAGCCAGCAACTGCATCAGTTCCATTGTCTAGGCCTGTGTCTGGTAAACCAGTATCTCCCTCAGTTTTGCTGCCTACTGTTACACCTGCACCTCACATGCTCAGGTCTGTCAACAATAATATTCACCATGTGTCAAATGGAATACCAACTGCTTTAAATACCCAGCCTCGGCAAGATACAGTTCTGGCTTCCGGAGTGAAGCGAGCTGCATCATTGCCCTCCATAGCTTCTAGTGAGCTAAGCTCTGTTACATTGCCTTCTGCTACTGGGAACTTGCATACTGTTGTGAATCAGGGGCAATCCACTGCTAGTACAATGCCTCCTTACCAACTAAACACAGGTTCAGAATGTGCTGTAAAGGATGCCAACTATTATAAAAACCTCGTTAGGCAACATGGTGCAGATAAGCAGGACTCACAAATAGGTATCCGTCATAGTAACTTCCAAGATTTGAAACCAGTACATAACATTAACAAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATACTTTAAAAGCTCAAGGGGGTGCCGAAATGGTAACAATTGCCCCTATCAGCATGATGTATCAGTTCACTGGGGAGCTGGTAACGTCCTAGGGGCCCAGAATGCAAAAAGATTTAAATTATGA 1752 0.4344 MCCHCTPPSAYKISLFSRTPPPSPNVTSPSPQFILKRLISLCSHSSSIAIFRIPVPKSIVNLSVLYFLSSSISLRFNMRRTRKFNRVSWATGGNLCQVKLFLSEDYPSKVGQKLPDHLQAKISSTLHSSTNESDDLPPGFESSHFLNRRKVEFSHISQIKWERPPRLVFSSHWRVAAGEESREREAQKLREMKVLEAVYPRISAIPPSPSVSLDVEEEDYDDNITPLVSIIPIEEEESINSVTLPHNVQSQNLQQYISAMTPISSDCNTSHTVSFDACGALISGGVSLGSEADLAAASAIVAAIVKSNEQGRLVDMDLLVEIFNDPKMIEKLTKENRIATTTVSASSKAVDIPSSGSKPAIPSVSLLNPTPDKPATASVPLSRPVSGKPVSPSVLLPTVTPAPHMLRSVNNNIHHVSNGIPTALNTQPRQDTVLASGVKRAASLPSIASSELSSVTLPSATGNLHTVVNQGQSTASTMPPYQLNTGSECAVKDANYYKNLVRQHGADKQDSQIGIRHSNFQDLKPVHNINKGEVKHKIQKPCIYFKSSRGCRNGNNCPYQHDVSVHWGAGNVLGAQNAKRFKL. 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02893 583 ProSiteProfiles Zinc finger C3H1-type profile. 537 564 IPR000571 GO:0046872
Seca12g02893 583 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 80 583 - -
Seca12g02893 583 MobiDBLite consensus disorder prediction 343 389 - -
Seca12g02893 583 MobiDBLite consensus disorder prediction 343 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02893 Seca-Chr12 54116212 54122191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02893 158 228 Homeobox Transcription Factor Family AT4G02560 39.437 6.34e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g02893 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02893 - - gmx:102661587 637.106