Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02865 ATGGGCACCTGCTTTTCCGCCACCAAAGTCAGTGGCTCCAACAGCAACGCCGCAACTGCCAACCAAAACCGCAACGAAACCGCCCCCAAGCCTCAATCGGCGGCAGCACAGAAGAAGCAACCATCCAACCACCACCGCCACGTGGCAAGTTCCAGGCACGTGCCGTGTGGTAAGCGCGCCGATTTCGGTTACGACAAGGACTTCGATAAGCGTTACTCGCTCGGGAAATTGTTAGGACACGGCCAATTCGGTTACACTTATGTCGGAATTGACAAAGCCAGTGGCGATCGCGTGGCCGTTAAGAGGCTCGAGAAGAGTAAAATGGTTCTCCCTGTTGCTGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCACTTGCTGGCCACGAGAATGTGGTTCAGTTCTATAATGCTTTTGATGATGATTCATACGTGTACATAGTTATGGAGTTATGTGAAGGTGGAGAACTGTTAGATCGGATATTGTCCAAGAAAAACAGCCGTTATACTGAAAAAGATGCAGCTGTGGTTGTTAGGCAGATGCTCAAGGTTGCGGCTGAGTGTCATTTACATGGTTTGGTACACCGCGACATGAAACCAGAGAATTTTCTTTTCAAATCAACTAAAGAAGATTCACCTTTAAAGGCTACAGATTTTGGGTTGTCAGATTTCATAAAACCCGGAAAGAAGTTTCATGATATTGTTGGCAGTGCTTATTATGTTGCACCTGAAGTGTTAAAACGGAAATCAGGCCCTCAATCAGATGTCTGGAGTATTGGTGTTATTACATACATATTGCTATGTGGGAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGTAACAAGCCTGATTTCCACCGGAAACCGTGGCCAACTATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGCTAATAAAGGATCCTCGGGCAAGATTAACTGCTGCTCAAGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGGGCAACATGCGGCAGTTTGTGACATATAGTCGATTGAAACAATTTGCCCTGAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGTCTGATCTGAAAGATCAATTTGATGCAATAGATGTGGACAAAAATGGTTCAATTAGCCTGGAAGAGATGAGACAGGCTCTAGCTAAAGATCTTCCTTGGAAGTTGAAAGAATCACGTGTTCTAGAGATACTGCAAGCGATAGACAGCAACACAGATGGGCTAGTGGATTTCACTGAATTTGTGGCAGCTACGATACATGTGCATCAATTGGAGGAACATGACTCTTATAAGTGGCAGCAACGGTCACATGCTGCTTTCCAGAAATTTGACTTGGATAAAGATGGCTATATCACTCCAGAGGAACTTAGAATGGTTGATCTAATGTCTTTGGTCAAGCTTCCAATATATTTTTTATGA 1488 0.4415 MGTCFSATKVSGSNSNAATANQNRNETAPKPQSAAAQKKQPSNHHRHVASSRHVPCGKRADFGYDKDFDKRYSLGKLLGHGQFGYTYVGIDKASGDRVAVKRLEKSKMVLPVAVEDVKREVKILKALAGHENVVQFYNAFDDDSYVYIVMELCEGGELLDRILSKKNSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFHRKPWPTISNAAKDFVKKLLIKDPRARLTAAQALSHPWVREGGEALEIPIDISVLGNMRQFVTYSRLKQFALRALASTLNEEELSDLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATIHVHQLEEHDSYKWQQRSHAAFQKFDLDKDGYITPEELRMVDLMSLVKLPIYFL. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02865 495 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Seca12g02865 495 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Seca12g02865 495 ProSiteProfiles EF-hand calcium-binding domain profile. 454 489 IPR002048 GO:0005509
Seca12g02865 495 FunFam calcium-dependent protein kinase 28-like 158 351 - -
Seca12g02865 495 CDD EFh 379 440 IPR002048 GO:0005509
Seca12g02865 495 SUPERFAMILY Protein kinase-like (PK-like) 57 361 IPR011009 -
Seca12g02865 495 ProSiteProfiles Protein kinase domain profile. 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02865 495 MobiDBLite consensus disorder prediction 1 53 - -
Seca12g02865 495 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Seca12g02865 495 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Seca12g02865 495 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Seca12g02865 495 SMART efh_1 379 407 IPR002048 GO:0005509
Seca12g02865 495 SMART efh_1 416 444 IPR002048 GO:0005509
Seca12g02865 495 SMART efh_1 458 487 IPR002048 GO:0005509
Seca12g02865 495 Gene3D Phosphorylase Kinase; domain 1 65 157 - -
Seca12g02865 495 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Seca12g02865 495 FunFam CDPK-related kinase 1 65 157 - -
Seca12g02865 495 FunFam Calcium-dependent protein kinase 28 373 442 - -
Seca12g02865 495 Gene3D Transferase(Phosphotransferase) domain 1 158 346 - -
Seca12g02865 495 Gene3D - 350 481 - -
Seca12g02865 495 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 481 - -
Seca12g02865 495 MobiDBLite consensus disorder prediction 1 39 - -
Seca12g02865 495 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02865 495 CDD STKc_CAMK 71 331 - -
Seca12g02865 495 Pfam EF hand 462 481 IPR002048 GO:0005509
Seca12g02865 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Seca12g02865 495 Gene3D - 373 442 - -
Seca12g02865 495 SMART serkin_6 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02865 495 SUPERFAMILY EF-hand 361 482 IPR011992 -
Seca12g02865 495 Pfam EF-hand domain pair 378 441 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02865 Seca-Chr12 52965474 52971371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02865 1 481 EF-hand Containing Proteins AT2G17890 74.662 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca12g02865 Pkinase 4.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02865 K13412 - gmx:100798941 857.825