Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02859 ATGGATCATAGAGGTAAAAGAATGGAAGATTTGACTCCTGTTGATATTCGAAACATGGAGTTTGCTAGTGAAGAGCATGGTGAGATATTTTATAGGGCATATGCAAAGCGTCATGGATTTGTTGTTAGAAAGGATGAGATTGATCGGGACATTAAGGGCAATGTTATTATGCGTCAGTTTGTTTGGAACAAAGAGGGTAATTGTCAAGCTAAGATACGAATTCACTTAAATTATAAGACAGATAAATGGAAAGTGGTTTCTTTTGTGGAGACCCACAATCATCAGCTAACCCCTTCTACTTTTGTGCACTTACTACCTAGTAATAGAGGGTTGAATAATGCTGATAAAGCCCAAGTAGGGAGGTTGCATGCATATGGTGTTAGAACGTGTCACATAATGGGGTATATGCTAGATCAAAAAGGGGGATATGGTTCCCTTGGGTTTTGTAGAAAGGATCTGTATAATTATATTGAACGACAGAAGCTAGAAAAGATTAAAGATGGGGATGCACATTCTACCTTATGTTACATACAAGCAAAGGCAAACAATGATCCCACGCTTCGGGCTAGTTTCCTTGCTTCCGAGGACGGTACTCTAAAGCATTTGTTTTGGGCGGATGGAGGTAGTAGGGCTGATTATTACTGCTTTGGGGATGTTTTGGCATTTGACACTACCTATAAGAAAAAAAGATATAACAAGCCATTGGTCATTTTTTCTAGTTGTAATCATCATAGTCAGACTGTTGTTTTTGGTTGTGCTTTGGTTGCTGATGAGACGATTGAGACTTACAAGTGGCTATTGAAAGAATTTTTGCGTGCTATGTCTGATAAACATCCAGCTGCAGTAGTTACAGATGGAGATAGTAGTATGAGAGAAGCTATCAAGCAGGTGTTCCCCAATGCATCCCATCGCCTTTATGCATGGCATTTGCACAAAAATGCGTGTGAAAATGTCAAGAATGTTGGTTTTTTGGACGATTTCAAGGTAGCCATGTATTCTAATTTCACTGAGGATCAATTTGAATTATTTTGGAAGCGAATGGTGGCAAAGCATGGACTTGTAGGAAACAAGTGGGTGTCAAAAACCTATGAGAATAGATCATTGTGGGCCACTGCTTATTTCCGAGATAAATTTTTTGGCCGTATTAGAACAACATCACAGTGTGAGGCTATTAATTCCCTGGTGAAGGCATATGTTAATAAAAAAGATACCATTGTTGAATTCATCAATAGGTTTGAGCAAGTGTTGAGAGAATATAGGAACAATGAGATGATTGTAGATTTCAAAAATCTATTTACGGAGCCAGTCTTAACTACCTCTCTTCGCAAAATTGAGAGTGAGGAGTCAAAAATATTCACATTAGAGATTTTTCGGGAAGTGAAATCTGAGATTGAGGTTGCAGGTGCTTTGAATGTAAATGAACGTCTTGATCAGGGAGATAAATTGATTTTTAAGATGAGACATTATTGTAATCGCGGAAGTGAATTTCAGGTTGAGTATAATGTAGTGAATTCAAAATGTGTATGTGAATGTAGACTGTTTGAGAGTCGAGGAATCCCTTGTTCTCGTATTATATGTGTCATTAAAAATGAGAACATGCAAACTGTTCCGAGTTCTTTGATTGTGAGGCATTGGACAAAGAAATGA 1647 0.3789 MDHRGKRMEDLTPVDIRNMEFASEEHGEIFYRAYAKRHGFVVRKDEIDRDIKGNVIMRQFVWNKEGNCQAKIRIHLNYKTDKWKVVSFVETHNHQLTPSTFVHLLPSNRGLNNADKAQVGRLHAYGVRTCHIMGYMLDQKGGYGSLGFCRKDLYNYIERQKLEKIKDGDAHSTLCYIQAKANNDPTLRASFLASEDGTLKHLFWADGGSRADYYCFGDVLAFDTTYKKKRYNKPLVIFSSCNHHSQTVVFGCALVADETIETYKWLLKEFLRAMSDKHPAAVVTDGDSSMREAIKQVFPNASHRLYAWHLHKNACENVKNVGFLDDFKVAMYSNFTEDQFELFWKRMVAKHGLVGNKWVSKTYENRSLWATAYFRDKFFGRIRTTSQCEAINSLVKAYVNKKDTIVEFINRFEQVLREYRNNEMIVDFKNLFTEPVLTTSLRKIESEESKIFTLEIFREVKSEIEVAGALNVNERLDQGDKLIFKMRHYCNRGSEFQVEYNVVNSKCVCECRLFESRGIPCSRIICVIKNENMQTVPSSLIVRHWTKK. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02859 548 Pfam MULE transposase domain 219 313 IPR018289 -
Seca12g02859 548 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 548 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02859 Seca-Chr12 52373285 52374996 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g02859 MULE 6.9e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02859 - - ccaj:109792835 708.368