Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02848 ATGATCACCCTGTTTCTCATTATCCCACTGACATTATTGCTGCTTGGTTTAGTGTCACGAATCCATGGAAAAAGGGCCCCATATCCACCAGGCCCAAAAGGCTTTCCCATCATAGGCAACATCAACATGATGGACCAGCTAACACACAGGGGCTTAGCAAACTTAGCAAAGCAATACGGCGCCGTTTTCCACCTCCGAATAGGGTTCCTCCACATGGTCACCATTTCAAACGCAGAAGCAGCGCGTCAAGTGCTACAAGTGCAAGACAACATCTTCTCTAACCGCCCAGCCAACATAGCCATCAAATACCTCACTTACAACCGTTCTGATTTGGTCTTCGCTCATTACGGTCCTTTCTGGCGCCAGATTCGAAAGCTCTGCGTCATGAAACTCTTCAGCCGCAAGCGTCAAGAGACATGGCGTGCCGTTAGGGAAGAAATTGACGCCGTTGTACGCACCGTTGCGGCTAACGTCGGCAAGCCCGTGAACGTTGGGGATTTGGTGTTTAATCTCACGAAGAACATCACGTATCGTGCTGCTTTTGGGTCTAACTCAAAGGAAGGTCAAGATGAGTTCATTGCGATAATACAAGAGTTCTCAAAGTTGTTTGGAGAATTGAACATTGCGGACTTTATTCCGTGTCCTAGGTGGATTGATCCACAGGGTCTCAATGCAAGGCTCGTCAAGGCTCGTGGCGCACTTGACCGTTTCATTGACAAGATCATTGATGAACATATGGAGCAGAAGAGGAGGAGGACGAGTGTGTGCAAATGTGATGATGATGGTGACATGGACATGGTTGATGAGTTGTTAGCTTTCTACAGTTATGAGGAGGCAAAACTGAATAATGATGAATCAGATGATCTGCACAACTCCATCAAACTCAGTAAGGACAACATCAAAGGCATCATTATGGACCTGATGTTCGGAGGGACAGAGACTATAGCGTTAACAACTGAGTGGGCGATGGCGGACCTGATGAGAAGCCCACAAGACCTAAATTGTGTGCAACAAGAACTTGCTGCTAAAGTGGGCTTAGACCACCGTGTTGAGGAGCAGGACATCGAAAAACTCACCTACTTGAGATGCGCCATCAAGGAGACATTACGCCTTCACCCACCAATCCCCTTGCTTCTTCACGAGACAGCAGAGAATGCAACAATGGCTGGCTACTTCATCCCCAAGGGCTCACGTGTGATGATCAACGTGTGGGCCATTGCTAGAGACACAAACTGGTGGGAGGAGCCTGAAGTGTTCAAGCCCTCACGGTTCTTAAACCCGATTGCACCTGATTTCAATGGGAGTAACTTTGAGTTCATTCCATTTGGGTCAGGTCGAAGGTCTTGCCCGGGGATGCAGTTGGGCTTGTACACACTTGAATTAGCAGTAGCCCACCTACTTCACGACTTCACATGGGAGTTACCGGACGGAATGAAGCCCAGTGAAATGAACATGCGTGATGTGAACGGACTTAGTGCTGCTATGGCAAATCGACTTGTTGCCATTCCTACTAAGCGTGTGGTATGTCCTCTTTAA 1536 0.4811 MITLFLIIPLTLLLLGLVSRIHGKRAPYPPGPKGFPIIGNINMMDQLTHRGLANLAKQYGAVFHLRIGFLHMVTISNAEAARQVLQVQDNIFSNRPANIAIKYLTYNRSDLVFAHYGPFWRQIRKLCVMKLFSRKRQETWRAVREEIDAVVRTVAANVGKPVNVGDLVFNLTKNITYRAAFGSNSKEGQDEFIAIIQEFSKLFGELNIADFIPCPRWIDPQGLNARLVKARGALDRFIDKIIDEHMEQKRRRTSVCKCDDDGDMDMVDELLAFYSYEEAKLNNDESDDLHNSIKLSKDNIKGIIMDLMFGGTETIALTTEWAMADLMRSPQDLNCVQQELAAKVGLDHRVEEQDIEKLTYLRCAIKETLRLHPPIPLLLHETAENATMAGYFIPKGSRVMINVWAIARDTNWWEEPEVFKPSRFLNPIAPDFNGSNFEFIPFGSGRRSCPGMQLGLYTLELAVAHLLHDFTWELPDGMKPSEMNMRDVNGLSAAMANRLVAIPTKRVVCPL. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02848 511 SUPERFAMILY Cytochrome P450 29 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 CDD CYP71-like 58 499 - -
Seca12g02848 511 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS E-class P450 group I signature 80 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PANTHER CYTOCHROME P450 84A1-RELATED 4 511 - -
Seca12g02848 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Seca12g02848 511 Gene3D Cytochrome P450 22 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 FunFam Cytochrome P450 84A1 21 505 - -
Seca12g02848 511 Pfam Cytochrome P450 29 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca12g02848 511 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02848 Seca-Chr12 52041762 52051106 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02848 35 511 Monolignol Biosynthesis Gene Families AT4G36220 69.392 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02848 K09755 - gmx:100807448 754.207