Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02842 ATGCTTTACCAAACTCACCATCCCCTTCTCTTTCAATTTCATCCTTTCACTTCTTCCACCACCCCTCCTCACCTTTCAACCACACCCCCATCTCCAACTTCCCTTCCTCTCTTCTCCTTCCTTCCTCTCTCACAGGCCGAAAGAGAAATGGAGTGTATGGAAGCAGCGCTGAAGAGCAGTTTTAGGAAAGACATGTCCATGAAACTCACCCCCCAAACGTTGTTCCAAGAGGAGTTGTCGGTGTTTAATGTGCAAAATGTTGCTTCTTGCGACGACTTGTTTGTTGACGAACTCCTTGACTTTTCGCACGAAGAATGTCTCTTCGAAGAAAAAGAAGAAAAACCCGAACCACAAAACAATGCTTCTTCTTCCCCTGTTTCCCCTCAGAACCAGAACCAAAGCAACCAAATTTGCTACCCCTCATTCAACGACCAATTTGGCTCTTTACCCACCAGCGAACTCAGCGTTCCGGATGAAGATGCTGCGGACTTAGAATGGTTATCTCATTTCGTTGAGGATTCCTTCTCGGAACACTCTCTTACCTTCCCAAACGCAACGTTAACGGAGAACCTCACAGCGAAAGCGCCTGAGCCGGTTGAACCGGTTTCGGTTCAACCCTGTTTCAAAACCCCGGTTCCGGCGAAGGCAAGGAGCAAGCGAACCAGAACCGGTGTTCGGGTCTGGCCACAGCCACTAAGGTCCTCTTCTTTCACTGAGTTATCTTCAACCTCAAGCTCCACAACCCCTTCTTCATCTTCCTCCTCCACACCCTCGAGCCCCTTGCTAATTTGCGCCGCAAGCCTCGAGCAGGGTTGCTCGGAGATGAAGCCGCCGGAGAAGAAGGTGAAGAAGAGGGCCTCGCCGGAAGGTGGCGCGGTGGCGCCAAGGCGGTGCAGCCATTGTGGGGTTCAGAAAACCCCTCAGTGGCGAACCGGACCGCTTGGACCGAAAACGCTATGTAACGCTTGTGGGGTCCGATACAAGTCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGCCCAACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTCTGGAGATGCGGCGGAAGAAGGAGGTAACGGCTGAACCGGTCACCTGTTTAGCACCTCATCCGGTTGTTCCCGGTTTTTGA 1149 0.5213 MLYQTHHPLLFQFHPFTSSTTPPHLSTTPPSPTSLPLFSFLPLSQAEREMECMEAALKSSFRKDMSMKLTPQTLFQEELSVFNVQNVASCDDLFVDELLDFSHEECLFEEKEEKPEPQNNASSSPVSPQNQNQSNQICYPSFNDQFGSLPTSELSVPDEDAADLEWLSHFVEDSFSEHSLTFPNATLTENLTAKAPEPVEPVSVQPCFKTPVPAKARSKRTRTGVRVWPQPLRSSSFTELSSTSSSTTPSSSSSSTPSSPLLICAASLEQGCSEMKPPEKKVKKRASPEGGAVAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVTAEPVTCLAPHPVVPGF. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02842 382 FunFam GATA transcription factor 288 372 - -
Seca12g02842 382 CDD ZnF_GATA 297 345 IPR000679 GO:0006355|GO:0043565
Seca12g02842 382 MobiDBLite consensus disorder prediction 118 134 - -
Seca12g02842 382 MobiDBLite consensus disorder prediction 236 259 - -
Seca12g02842 382 SMART GATA_3 292 346 IPR000679 GO:0006355|GO:0043565
Seca12g02842 382 PANTHER GATA TRANSCRIPTION FACTOR 85 369 - -
Seca12g02842 382 ProSiteProfiles GATA-type zinc finger domain profile. 292 328 IPR000679 GO:0006355|GO:0043565
Seca12g02842 382 ProSitePatterns GATA-type zinc finger domain. 298 323 IPR000679 GO:0006355|GO:0043565
Seca12g02842 382 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 295 354 - -
Seca12g02842 382 MobiDBLite consensus disorder prediction 109 134 - -
Seca12g02842 382 Coils Coil 43 63 - -
Seca12g02842 382 MobiDBLite consensus disorder prediction 274 297 - -
Seca12g02842 382 Pfam GATA zinc finger 298 332 IPR000679 GO:0006355|GO:0043565
Seca12g02842 382 Gene3D - 291 366 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02842 Seca-Chr12 51759061 51760682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02842 54 373 C2C2-Gata Transcription Factor Family AT5G66320 49.123 8.94e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca12g02842 GATA 2.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02842 - - aprc:113869559 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02842 12 51759061 51760682 Seca12g02842 12 51759061 51760682 ECH