Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02827 ATGGACATTGGTGGTGAAGTAGAAAAGACCGTACGAGAGTTGAGGCAATACTTCAGAACTGGAAAAACCAGGAGTGTTACATGGAGGAAAAACCAGCTCAAAGCTCTTATAGACTTTGTTCATCAAAATGAAGATGCTATATCTAAGGTTCTTCACCAAGATCTTGGGAAACACCCTGTTGAAGCTTACCGTGATGAGATTGGAGGGGTAGACAAATCAGCCAGCAACGCTTTGAGCTGTGTTGAAAAATGGATGGCCCCTAAAAAGAGTCATATCCCTTTGCTTTTCTTCCCAGCAAAAGGAGAACTATTGTCAGAACCACTTGGTGTGGTTCTCATATTTTCTTCTTGGAACATGCCTATCATGCTGGCCTTGGATCCATTAATTGGAGCAATATCTGCTGGAAATGTTGTAGTCATAAAACCATCAGATCTAGCTCCAGCATCCTCTTCTTTTCTTGCCAATACCCTTCCTCACTACTTGGACTCTAATGCCATCAAGGTGATTGAGGGTGGAGCTGATGTCTGTGAACAACTACTGCTACAGAAATGGGACAAAATATTTTTCACTGGAAGTCAACGCGTTGCAAGAATGGTCATGTCAGCTGCTGCAAAGAATTTAACTCCTGTTACTCTAGAGCTGGGTGGAAAATGCCCTGCTATACTTGATTCTCTTCCCAATCCCTCAGATTTTAAGTTTGCAGTCAAAAGAATCGTAGGAGCAAAGTGGGGATGTTGTAACGGACAGGCATGTATAACAGTGGACTATGTGCTTGTTGAGGAGCAGTTCTCATCTAATCTGATAGAACTATTAAAGAAATTCATCAGAAAATTTTTCGGTGACAACCTAGCAGAGTCAAAGGCAATTTCAAGAATTATAAACAAGCAGCACTTTGAGAGATTATGCAATCTTCTTAAAGACCCTCTCGTTGCAGCTTCCATCATCCATGGTGGTTCAGTCGATGAAGAAAACCTGTAA 978 0.4162 MDIGGEVEKTVRELRQYFRTGKTRSVTWRKNQLKALIDFVHQNEDAISKVLHQDLGKHPVEAYRDEIGGVDKSASNALSCVEKWMAPKKSHIPLLFFPAKGELLSEPLGVVLIFSSWNMPIMLALDPLIGAISAGNVVVIKPSDLAPASSSFLANTLPHYLDSNAIKVIEGGADVCEQLLLQKWDKIFFTGSQRVARMVMSAAAKNLTPVTLELGGKCPAILDSLPNPSDFKFAVKRIVGAKWGCCNGQACITVDYVLVEEQFSSNLIELLKKFIRKFFGDNLAESKAISRIINKQHFERLCNLLKDPLVAASIIHGGSVDEENL. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02827 325 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 216 324 IPR016163 GO:0016620
Seca12g02827 325 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 15 215 IPR016162 GO:0016491
Seca12g02827 325 PANTHER ALDEHYDE DEHYDROGENASE 6 324 IPR012394 GO:0006081
Seca12g02827 325 Pfam Aldehyde dehydrogenase family 6 320 IPR015590 GO:0016491
Seca12g02827 325 FunFam Aldehyde dehydrogenase 15 219 - -
Seca12g02827 325 SUPERFAMILY ALDH-like 6 323 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02827 Seca-Chr12 51042504 51046713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02827 7 325 Aldehyde Dehydrogenase Gene Family AT4G36250 57.994 2.55e-139 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02827 K00128 - gmx:100808513 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02827 12 51042504 51046713 Seca12g02827 12 51042504 51046713 ECH