Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02780 ATGGGAGGCGTTCGAGTCATCTCCACCACTGCAATCCAGGCACAGAGTGACTCAACTCTTAAACAAATTCATTTAACCCCATGGGATCTCCAATTCCTCCCACTTGAAACCATCCAAAAAGGCCTTCTTTTTCACCACCCCTTAGTAGAAAACACAATCCACCACTTGAAACATTCATTCTCCTCCACCCTTGCCTTCTTCCCTCCTCTTGCTGGACGTCTCATAATTACACACCAAGAAGACAACACTGCCTCCTCCTTCATTTCTTGCAACAATGCAGGTGCACTCTTTCTCCATGCAGCAGCACACAACACTAGTGTTGCCGACATCCTTCAACCCAACTACGTTCCTCCCATTGTCCATTCTTTCTTCCCACTTAACGGCGTTAAAAACTACCAAGGCACGTCACAGCCGTTACTAGCAGTCCAGGTGACGGAGCTACTTGACGGCATCTTCATCGGCTGCACAATCAACCACGCCGTTGCAGACGGCAAGTCGTTTTGGCTTTTCATCAATTCTTGGGCTGAAATCTCACGTCGTAAAGGTAACTGCTTTAATCTTAAACCATCGAAACTCCCTCTATTTGAACGCTGGTTCATGGACGGCATTGACCGTCCAATACGGTTTCACTTTCCGGAGGCAGAGGAGAACCAAAACCCTCAAAGTGAAAGCCTTAACCCATTATCCGAGAGGATCTTTCACTTCACAAAGGAGAAAATCGCACAACTCAAAGCTAAAGCAAACAGAGAGGCTAACACTGACAGAATATCCTCTTTGCAAGCGGTTTTAACTCACCTTTGGCTCTGTGTGACTCGTTGCAAACGACTTGACCCACAAGAAGAGGTTCGTTATGGCTTGCTGATAGGAGTTAGACCCAGGATGGTTCCGCCTCTGGGAGAGGGTTATTTTGGAAGCGCTGCGCTGGTGGGTTGTGTGACGATGAAAGCAGGGGAGCTATTGGAGGGTGGGATTGGGAAGGGTTGTTTGGAGATGAACAAGATGATTGCTTTGTACTCTGATGAGAAGGTGAAGAACCACTATGAGTCTTGGGTGAGAACCCCGATACTGTTTTCGATGGGTAGCATGATTGGTGGTAATTTCTTGGGGACCAGCAGTTCCCCAAGGTTCGATTTTTATGGGAATGATTTTGGTTGGGGGAAGCCTGTGGCGGTTAGAAGTGGCCGTGCAAATAAAAGAGAGGGAAAGATTACTGTGTTTGCTGGGGCAGAAGAAGGTAGTATTGACATTGAAGTGTGCCTTCCTTATGAGATTTTGGAGGCTATGGGAAATGATAATGACTTCACCAATGTCATTTCCAACTAA 1323 0.4686 MGGVRVISTTAIQAQSDSTLKQIHLTPWDLQFLPLETIQKGLLFHHPLVENTIHHLKHSFSSTLAFFPPLAGRLIITHQEDNTASSFISCNNAGALFLHAAAHNTSVADILQPNYVPPIVHSFFPLNGVKNYQGTSQPLLAVQVTELLDGIFIGCTINHAVADGKSFWLFINSWAEISRRKGNCFNLKPSKLPLFERWFMDGIDRPIRFHFPEAEENQNPQSESLNPLSERIFHFTKEKIAQLKAKANREANTDRISSLQAVLTHLWLCVTRCKRLDPQEEVRYGLLIGVRPRMVPPLGEGYFGSAALVGCVTMKAGELLEGGIGKGCLEMNKMIALYSDEKVKNHYESWVRTPILFSMGSMIGGNFLGTSSSPRFDFYGNDFGWGKPVAVRSGRANKREGKITVFAGAEEGSIDIEVCLPYEILEAMGNDNDFTNVISN. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02780 440 Gene3D - 4 214 IPR023213 -
Seca12g02780 440 Pfam Transferase family 4 431 - -
Seca12g02780 440 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 434 - -
Seca12g02780 440 Gene3D - 215 430 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02780 Seca-Chr12 49378205 49379527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02780 56 423 Monolignol Biosynthesis Gene Families AT5G48930 25.385 2.44e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02780 - - gmx:100500257 573.933