Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02772 ATGGAGTTTGGCGGTTTCAATGTTCAGCATCAGCTTCAAGAAGAGTCTGCTCAGTGCATAAATTCAGCCACTCCACCTTGGCATAAGCCTTTCACTAGTCAATCATGGATCCCAAGCAACATATACACCAATGGGTTTCTGACTGAGAGCTTTACAAATTCAAGAGAACAAGGGCACAAGTATGCCATGATTGATTCAATTAGAACTTCAACAGGGCAATTAGCCTTTGGTTTTCAAGATGGACATCAACAGCCTCCAAGAATCAAAGGGGAAGATGATCTATCTAATGATTTTTTACATAAACTAAGTGAAATAATGAACAGTTCCTCAAAGGTTAATGTGGATCAGTCAAGTTCACTAATCTCAAAGCGTGAACCACAATATAATTCTCCTAGCTTTTTCTCTACAACTGGAAAAGAGTTTTTGCCAGCTGCAGAGAATCTCTGTCACATTCAGAAGCCTATTGATGGAGGAATGGTTCTTAATAACATGAGATCATATAACTTTGGCGGCGTTTCTTCAATATCATCAAATTTACCATCCCATGTGACCTCTTCTTTGGACTTAAATTCTCAAATGTTAGATTTGTCTACAAGTTGTGGCCTTCAACTTTGCTATGATACTTTTGGTCTTAATCAGGAGACCTTATCTTTAAGCCACGCCAACACCAACATGCATGGTCGCCAAAATAGTCCATCAAATAAAATTCCATCATTCATGAGTGAAGTTACAATGATGAAAAGGCCTAGCAATTGCTCTCAAGTACCAAGAGAATGTGAAGCAAAAGCTAAGAAATCAAGACCTTCTTGCCCGCCCCTGAAGGTCAGAAAGGAAAAATTGGGGGACAGGATTCAAACTCTTCAGAGGTTAGTGGCTCCTTTTGGGAAGACAAGTACAGTGGCTGTATTAAGTGAAGCAATTGGCTATATCCACTTCCTTCATGAACAAATCCAGACTTTGAGCATTCCTTATATGAAGTCGGCGCAAAGCAAACCCCGTAGAATGATGCAGCTGGGATCAAGAAAGGTAGATAGCAGGGAATTCAAGCCAGACCTTAGAAGCAGAGGCTTGTGTCTTGTGCCCCTTTCTTATGCATCATTTATTCATCGTTGTGATTAG 1119 0.403 MEFGGFNVQHQLQEESAQCINSATPPWHKPFTSQSWIPSNIYTNGFLTESFTNSREQGHKYAMIDSIRTSTGQLAFGFQDGHQQPPRIKGEDDLSNDFLHKLSEIMNSSSKVNVDQSSSLISKREPQYNSPSFFSTTGKEFLPAAENLCHIQKPIDGGMVLNNMRSYNFGGVSSISSNLPSHVTSSLDLNSQMLDLSTSCGLQLCYDTFGLNQETLSLSHANTNMHGRQNSPSNKIPSFMSEVTMMKRPSNCSQVPRECEAKAKKSRPSCPPLKVRKEKLGDRIQTLQRLVAPFGKTSTVAVLSEAIGYIHFLHEQIQTLSIPYMKSAQSKPRRMMQLGSRKVDSREFKPDLRSRGLCLVPLSYASFIHRCD. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02772 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Seca12g02772 372 CDD bHLH_AtbHLH_like 274 321 IPR045239 -
Seca12g02772 372 Gene3D - 274 337 IPR036638 GO:0046983
Seca12g02772 372 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 113 366 - -
Seca12g02772 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 326 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02772 Seca-Chr12 49214790 49218565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02772 247 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 55.738 7.95e-35 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02772 - - gmx:100785177 383.259