Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02769 ATGTTTTCCACCAGAGACATAGCTTCACCATCCACAATCTTCTCCACTTATGCTTCCATGACAGCCTCTATTATGCTTCTTCGTTCAATGGCCAACGACCTCATACCTCAACCAATTCGTGGCCACCTCATCAATGCTTTCCACTACTTCATCAAGCCTCGTTCCCACACTCTCACACTCACCATAGAAGAGTATTCCAATGACATAGTCCGAAACCAAGTCTATGATGCAGCAGAGGCTTACTTGTCCACCAAACTCACCCCTGAAAATGAAAGGCTCAAGATCAGCAAGAGTCCAAAGGAGAAAAAAATGACTATTCGATTAGAAAAAGGTGAAGGGTTAATTGATTTCTATGATGGGGTTAAGCTCAATTGGAGATTCATTTGCTCTGAATCCGAGAAGAACAACCCAAATGATCGAAACAAAAGTAAGATGGAAAAAAGGTATTTTGAGGTGAGTTTTGACAAGAAGCATAAGGAGATTGTATTGGAGTCTTATCTTCCTTTCATTCTTGAGAAAGAGAAAGAGATGAAGGAAGAGGAAAGGGTGTTGAAGATGCATACTCTCAACACTTGTTATGGTTTTGGTGGGTTTAAATGGGATTCTATTAATTTGGATCACCCATCAACATTTGAGACTCTGGCTTTGGAGCCAGAGTTGAAGAATGAGGTGATTGAGGATTTGAATAGGTTTTTGAGGAGGAGGGATTTTTATAAGAAAGTTGGAAGGGCATGGAAACGTGGGTATTTGTTGTATGGCCCTCCGGGTACTGGAAAATCTAGCTTGATTGCAGCTATGGCTAATTACTTGAAGTTTGATATCTATGATCTTCAACTTGATAACTTGGTAACTGATTCGGACCTTAGAAAGTTGTTGCTGGCAACTGCAAATAGGTCTATTTTGGTGATTGAAGATATTGATTGTAGTGTGGATTTGCCACGGCGTCGACATGGAGATGGACCTAAACAAGCTGACATACAGTTGAGTTTGTCTGGATTACTTAACTTCATTGATGGGCTATGGTCAAGTTGTGGAGATGAGAGAATCATCATACTTACCACTAACCATAAGGAAAGGCTAGACCCAGCATTGTTGAGACCAGGGAGAATGGACATGCACATTCACATGTCCTATTGCTCCTACCACGGATTCAAGGTTTTGGCTTCAAATTACTTGGATGTTTCCCATCACCACCTCTTTGGGGAGATTGAAGGGCTAATAGAGGACACACAAATAACCCCTGCACAAGTGGCAGAGGAATTGATGAAGAGTGAAGATGCTGATGTGGCACTCAATGGATTCGTGAAGCTACTTAAACGGAAGAAGATGGAAGGTGATGTGTGTCATAATGATGGTGCAGAAATTCAGCAATCTAAAAGGCTTAAGGTTGATTGCAAGCAGAAAAGTGCTGTGGGTACAAAAAGAAGGACAAGAAAAGGGCGCACTTTGTAG 1452 0.4153 MFSTRDIASPSTIFSTYASMTASIMLLRSMANDLIPQPIRGHLINAFHYFIKPRSHTLTLTIEEYSNDIVRNQVYDAAEAYLSTKLTPENERLKISKSPKEKKMTIRLEKGEGLIDFYDGVKLNWRFICSESEKNNPNDRNKSKMEKRYFEVSFDKKHKEIVLESYLPFILEKEKEMKEEERVLKMHTLNTCYGFGGFKWDSINLDHPSTFETLALEPELKNEVIEDLNRFLRRRDFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLQLDNLVTDSDLRKLLLATANRSILVIEDIDCSVDLPRRRHGDGPKQADIQLSLSGLLNFIDGLWSSCGDERIIILTTNHKERLDPALLRPGRMDMHIHMSYCSYHGFKVLASNYLDVSHHHLFGEIEGLIEDTQITPAQVAEELMKSEDADVALNGFVKLLKRKKMEGDVCHNDGAEIQQSKRLKVDCKQKSAVGTKRRTRKGRTL. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02769 483 Coils Coil 170 190 - -
Seca12g02769 483 Gene3D - 199 374 IPR027417 -
Seca12g02769 483 Pfam Domain associated at C-terminal with AAA 35 128 IPR025753 -
Seca12g02769 483 ProSitePatterns AAA-protein family signature. 348 366 IPR003960 GO:0005524|GO:0016887
Seca12g02769 483 Pfam ATPase family associated with various cellular activities (AAA) 250 377 IPR003959 GO:0005524|GO:0016887
Seca12g02769 483 PANTHER BCS1 AAA-TYPE ATPASE 15 443 - -
Seca12g02769 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 427 IPR027417 -
Seca12g02769 483 SMART AAA_5 245 380 IPR003593 GO:0016887
Seca12g02769 483 Gene3D - 375 445 - -
Seca12g02769 483 CDD RecA-like_BCS1 224 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02769 Seca-Chr12 49083587 49087024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02769 247 380 Calmodulin-binding Proteins AT3G56690 29.577 2.81e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02769 - - gmx:100812263 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02769 12 49083587 49087024 Seca12g02769 12 49083587 49087024 ECH