Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02727 ATGGCATCATCTTGGACTCCAAGGCAGAACAAATTGTTTGAACAAGCCCTGGCTTTATATGATAGAGAAACCCCTGACAGATGGCAGAATGTTGCCAAAGTGGTGGGAAGATCAGTTGAGGAAGTTAAAAGACACTATGAGATCCTCAAAGAAGATGTGGAACGAATTGAACATGGTCAAATCCCATTCCCTCGTTACAGAACAAACACCAACAACACCTAA 222 0.4234 MASSWTPRQNKLFEQALALYDRETPDRWQNVAKVVGRSVEEVKRHYEILKEDVERIEHGQIPFPRYRTNTNNT. 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02727 73 SMART sant 1 52 IPR001005 -
Seca12g02727 73 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 71 IPR044636 GO:0003700
Seca12g02727 73 CDD SANT 4 50 IPR001005 -
Seca12g02727 73 FunFam Transcription factor SRM1 1 63 - -
Seca12g02727 73 SUPERFAMILY Homeodomain-like 3 57 IPR009057 -
Seca12g02727 73 Coils Coil 39 59 - -
Seca12g02727 73 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Seca12g02727 73 Gene3D - 2 63 - -
Seca12g02727 73 Pfam Myb-like DNA-binding domain 3 46 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02727 Seca-Chr12 47788122 47789817 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g02727 Myb_DNA-binding 1.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02727 - - lja:Lj4g3v0973380.1 142.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02727 12 47788122 47789817 Seca12g02727 12 47788122 47789817 ECH
Seca4g03507 4 60971729 60973776 Seca12g02727 12 47788122 47789817 ECH