Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02721 ATGCCTACCACTTTGGTTTATAATAATCATCTCCCCAACAGGGACAATTCCTCTTCTTCAACTTTAGGCCAACAAATTGATCAACCTGATGCTCAAACTCACACATTAGTTTTCACTGATCCACCTCAAACTTCACATCATCTTCTTTATCCCTCACCAAACCCTGTTCAACTTCAACAACTAAACAGACCCAGAAGAGATCCAGATCTAATTCCTTCTTCTCCTATTGCTGCCACAACAACCATAACAAGCACCCCAATTGTTAACCTTCCAAGAACAACAACAACAGGAACTACTTCTACTACCCCTTTGATTAGATACAGAGAGTGTCTGAAGAATCATGCAGCTAGCATAGGGGGTCATGTTGTAGATGGATGTGGTGAGTTCATGCCAAATGGACAAGAAGGCACCCCTGAATCATTGATCTGTGCTGCTTGTACCTGCCACCGCAATTTCCACAGAAAAGAAGTTGAAGGTGAACCACAGCAACAAGTTTTCAACTATCACAGCTATTATTCCAACAAAAATTCTCATCTTCAGCTTAATACTCCCCACTCTTCTCTGCACCAACATCATAGACTTCCTTCACATGGGGTCACCACCACCACCCCTTCAGCAGGGTTGATTCAACCAATGATGATGGCTTTTGGGGGAAGTACTGGAGGAGGTCCAGCTGAGTCCTCAAGTGAAGATCTTAACATGTTTCAGTCTAATGATGGAGGCCAATTATCAGTGCAGCCACCACTATCAAAGAAGAGGTTCAGGACAAAGTTCACACAGGAACAAAAGGATAAGATGATGGAGTTTGCTGAGAAATTGGAGTGGAAGATCCAGAAACAAGATGAACAGGAATTACAGCAATTTTGTTCTCATGTTGGTCTCAAAAGAAAGGTTTTCAAGGTTTGGATGCACAATAGCAAGCAAGCCATGAAGAAGAAACAAATGTAA 948 0.4219 MPTTLVYNNHLPNRDNSSSSTLGQQIDQPDAQTHTLVFTDPPQTSHHLLYPSPNPVQLQQLNRPRRDPDLIPSSPIAATTTITSTPIVNLPRTTTTGTTSTTPLIRYRECLKNHAASIGGHVVDGCGEFMPNGQEGTPESLICAACTCHRNFHRKEVEGEPQQQVFNYHSYYSNKNSHLQLNTPHSSLHQHHRLPSHGVTTTTPSAGLIQPMMMAFGGSTGGGPAESSSEDLNMFQSNDGGQLSVQPPLSKKRFRTKFTQEQKDKMMEFAEKLEWKIQKQDEQELQQFCSHVGLKRKVFKVWMHNSKQAMKKKQM. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02721 315 Pfam ZF-HD protein dimerisation region 105 157 IPR006456 -
Seca12g02721 315 NCBIfam homeobox domain, ZF-HD class 251 308 IPR006455 -
Seca12g02721 315 Gene3D - 237 312 - -
Seca12g02721 315 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g02721 315 FunFam Zinc-finger homeodomain protein 2 240 312 - -
Seca12g02721 315 MobiDBLite consensus disorder prediction 222 245 - -
Seca12g02721 315 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 95 308 - -
Seca12g02721 315 SUPERFAMILY Homeodomain-like 240 312 IPR009057 -
Seca12g02721 315 MobiDBLite consensus disorder prediction 218 247 - -
Seca12g02721 315 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 106 157 IPR006456 -
Seca12g02721 315 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 107 156 IPR006456 -
Seca12g02721 315 ProSiteProfiles 'Homeobox' domain profile. 249 313 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02721 Seca-Chr12 47656923 47657897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02721 87 315 ZF-HD Transcription Factor Family AT2G18350 50.000 2.09e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca12g02721 ZF-HD_dimer 8.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02721 - - ccaj:109810490 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02721 12 47656923 47657897 Seca12g02721 12 47656923 47657897 ECH
Seca12g02721 12 47656923 47657897 Seca12g02721 12 47656923 47657897 PCT