Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02711 ATGCGTCTTGGGACCCCTTCCTCCCTCTCCCGTATTCTATTCCCCACGTTAAGGACTGAAAGTACTGTTTCTGCTGCGGGTTCTAATCCCCACCCAAGTAGCACACGATTTATTGCTTATGAAGAACTTAAAGAAGCAGCAAACAATTTTGAACCAGCGAGTGTACCTGGAGAAGGAGGGTTTGGTAGAGTTTTTAAAGGTGTCTTAAATGATGGTACTTCTGTAGAAATTAAGAGGCTTACAAGTGGAGGGCAACAAGGTGACAAAGAGTTTCTGGTTGAGGTTGAAATGCTTAGCCGATTGCATCACTATAACCTTGTAAAACTGGTGGGATACTATAGTAGTCATGACTCATCACAAAATCTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAAGCTTGGCTTCATGGTAATATAATTTTTAAAATCATGGGTCCCTTGGGAATAAATTGTCCTTTGGATTGGGACACCAGAATAAAAATTGCTCTTGATGCTGTAAGAGGACTTTCATACCTGCATGAAGACTCACAGCCCTGTGTAATACACAGATATTTCAAGGCATCCAACATATTGCTTGAGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAGGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCCATGACTGGGCACCTACTTGTTAAAAGTGATGTTTATAGCTATGGGGTTGTCTTGCAAGAACTACTTACTGGAAGGAAATATGTCACAGCCAAGTGCACAAGAGAACCTTGTTACTTGGGTTGGGCTAGGCCAATCCTGAGAGACAAGGACCGACTGGAAGAGATTGTTGATCCCAAACTTGGGGGAAAGTATCCAAAGGAAGATTTTGTTCGTGTGTGCACTATTGCGGCAGCTTGTGTTGCTCCTGAAGCAAGCCAACGACCCACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGCATCACAAAATATCAAGATTCTATGTTAGCCTCATCCAATACACGGCCAAACCTGAGACAGTCCTCTAGCACTTTTGAGTTTGACGGAACATCTTCAATGTTCTCCTCATGTCGTTACTCTGGTCTAAGTGCCGCCTTTGACAATGAGAACATTTCTAGGACGGTGGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 1209 0.4309 MRLGTPSSLSRILFPTLRTESTVSAAGSNPHPSSTRFIAYEELKEAANNFEPASVPGEGGFGRVFKGVLNDGTSVEIKRLTSGGQQGDKEFLVEVEMLSRLHHYNLVKLVGYYSSHDSSQNLLCYELVPNGSLEAWLHGNIIFKIMGPLGINCPLDWDTRIKIALDAVRGLSYLHEDSQPCVIHRYFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLQELLTGRKYVTAKCTREPCYLGWARPILRDKDRLEEIVDPKLGGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITKYQDSMLASSNTRPNLRQSSSTFEFDGTSSMFSSCRYSGLSAAFDNENISRTVVFSEDLHEGR. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02711 402 PANTHER OS01G0750732 PROTEIN 27 350 - -
Seca12g02711 402 Gene3D Phosphorylase Kinase; domain 1 32 127 - -
Seca12g02711 402 SUPERFAMILY Protein kinase-like (PK-like) 27 334 IPR011009 -
Seca12g02711 402 Gene3D Transferase(Phosphotransferase) domain 1 128 355 - -
Seca12g02711 402 Pfam Protein tyrosine and serine/threonine kinase 57 332 IPR001245 GO:0004672|GO:0006468
Seca12g02711 402 FunFam Receptor-like serine/threonine-protein kinase ALE2 128 351 - -
Seca12g02711 402 ProSiteProfiles Protein kinase domain profile. 50 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02711 402 FunFam Receptor-like serine/threonine-protein kinase ALE2 30 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02711 Seca-Chr12 46801413 46802947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02711 24 402 Receptor kinase-like Gene Family AT4G02010 77.690 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca12g02711 PK_Tyr_Ser-Thr 3.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02711 - - adu:107492376 654.055