Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02704 ATGCATCGTTGTTGCAGTAATAGCTCTCAGGGGCACGTGATGGGAACGTGCACATGTGGCATGTTTCACAGCCAAACCAATTCCTACTCTATGCTCTTTTCCATGCCCAATAACAAACCATACGATGATTATGAATTCGAAATGTACCACTCTTCCTCTTCTTCCGTGGACTGCACGCTCTCCCTTGGAACCCCTTCCACGCGTTTAACTGAAGACGAAGAGAAACGTAACCGCCACGAACGTCGCTCTTCCGTTACAAATTTTTGTTGGGATTTATCGCAATCAAAACAGTATAACAACTCGCAATCTCACACCAAACCCAACAGATCAGGAACCAATGGTAACTCCAACAATGATCCTCTCCTTGCTCGCCGTTGCGCTAACTGTGACACCACTTCCACACCCCTCTGGAGGAATGGGCCTCGTGGCCCAAAGTCGCTATGTAATGCTTGTGGGATAAGATATAAGAAGGAAGAGAGAAGAGCGAATGCTGCCGCTGCCACGTCAGCGGCGGGTTCCGGCGGCGTGATGGAGTCGGCGCGTGTTTACGGCCAACAGAATAATTCGTGGTACGCACACTCGCAAGGCGTTGGCAATGAGTTACGGTTTGTTGATGATTCGGATAGGGACTCGGAGAATGGAATACCATTTCTCTCTTGGAGGCTCAATGTTGCAGATAGAACGAGCCTTGTTCACGACTTCACAAGATGA 711 0.4909 MHRCCSNSSQGHVMGTCTCGMFHSQTNSYSMLFSMPNNKPYDDYEFEMYHSSSSSVDCTLSLGTPSTRLTEDEEKRNRHERRSSVTNFCWDLSQSKQYNNSQSHTKPNRSGTNGNSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAAAATSAAGSGGVMESARVYGQQNNSWYAHSQGVGNELRFVDDSDRDSENGIPFLSWRLNVADRTSLVHDFTR. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02704 236 SMART GATA_3 120 172 IPR000679 GO:0006355|GO:0043565
Seca12g02704 236 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 164 - -
Seca12g02704 236 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Seca12g02704 236 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
Seca12g02704 236 ProSiteProfiles GATA-type zinc finger domain profile. 120 156 IPR000679 GO:0006355|GO:0043565
Seca12g02704 236 PANTHER GATA TRANSCRIPTION FACTOR 18 12 236 IPR044272 GO:0003700|GO:0009908
Seca12g02704 236 Gene3D - 122 176 IPR013088 GO:0006355|GO:0008270
Seca12g02704 236 MobiDBLite consensus disorder prediction 97 120 - -
Seca12g02704 236 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02704 Seca-Chr12 46603900 46605419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02704 18 236 C2C2-Gata Transcription Factor Family AT3G50870 46.996 1.50e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca12g02704 GATA 6.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02704 - - gmx:100790571 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02704 12 46603900 46605419 Seca12g02704 12 46603900 46605419 ECH
Seca12g02704 12 46603900 46605419 Seca12g02704 12 46603900 46605419 PCT