Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02666 ATGTCTTCCCCTCATAACTCTTCTCCTGATGATGCCTCACCCGATGACTCCACTCCTGATAACTCCTCACCCGATAACTCAACACCCGATAATTCCGTACCTGATAAATCAGCCCCTCATAACTCCACGCCTGATGATTCCACACCTGATAATTCCACGCCTGATAACTCAAATGCATCACACAAAAGTTCATCATCGTCTCCAGTGCTGGATCAATCTCCAACACCACCAAATTCATCACATAAATCATTGTCAAATAACGGCAAGGATAATGACACCAAGGCAATAGTTGGAGGTGCGGTTGGAGTAGGGTTCGTCATTCTTATCCTAGTTATTGTTTGTTTCATTTGCTCCAGGAAGAAGAAACAAAGACAAAAGTACTATTATGGAGGCCCTTCCCTTGGAAAAGGGAGTAACTATTACAATAGCGGACAACACCCTCACCCTAATTGGCAATCAGGTCCGAGTCCAAATGGGATGGACCATGTCGTGAGGATGCAACAATCACCTAATGGAATGGGTCCTCCTAGTGGTGTTTGGGGTGCACCACATCCTCTAATGAATAGTGGTGACATGAGTGGCAATTACTCAATGGGGATGGGACCAAACTCTCTACCACCTCCCTCTCCAGGCCTCTCTCTTACACTCAAGGGTGGTACCTTCACATATGAGGAATTGGCTTCTGCCACCAAAGGATTTGCTAATGAAAACATTATAGGACAAGGTGGATTTGGTTATGTCCATAAAGGAATATTGCCTAATGGAAAGGAAGTGGCAGTTAAGAGTCTAAAATCAGGTAGCGGACAAGGAGAACGTGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATATTGTATTTATGGCGGGCAGAGAATGTTGGTCTATGAATTTGTTCCCAATCAAACTTTAGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAAAATTGCACTAGGATCTGCCAAAGGGCTTGCCTACCTTCATGAAGATTGCAGTCCTCGCATAATCCACCGTGATATTAAAGCTTCTAATGTCCTTATTGATAATAGCTTCGAAGCTAAGGTATCTGATTTTGGATTGGCTAAGTTAACTACTGATAATAATACACATGTCTCAACTCGCGTCATGGGAACATTCGGGTACTTGGCTCCAGAATATGCATCAAGTGGAAAATTGTCAGAGAAATCTGATGTTTTTTCATTTGGGGTAATGCTATTGGAACTGATAACTGGGAAGAGACCTTTGGATTTATCAAATGCCATGGATGAAAGCTTAGTGGATTGGGCTCGACCACTTCTAAACCAAGGGCTGGAGGAAAATGGGAACTTTGGAGAGTTGGTGGATCCATTTTTGGAGGGAAACTACAATAGTCAAGAAATGACAAGAATGGCAGCCTGTGCTGCTGCAAGCATTCGTCATTCTGCCAAGAAGCGTTCAAAAATGAGCCAGATAGTAAGAGCATTGGAAGGGGATGTTTCACTGGAAGACTTGAAAGGGGAGATGATGAAGCCTTCAGGGAATAGTAGTGTTTACACCTCATCATCAGGGGGCTCAGATTATGATACTATGCAATACAATGCTGATATGATAAAATTCAGAAAGGCAATAATGTCAAGCCAGGAATTCAGTGATAGCAGTGAGCTCTCGAGTAGAGAGATGGGCCATCATTAG 1725 0.4336 MSSPHNSSPDDASPDDSTPDNSSPDNSTPDNSVPDKSAPHNSTPDDSTPDNSTPDNSNASHKSSSSSPVLDQSPTPPNSSHKSLSNNGKDNDTKAIVGGAVGVGFVILILVIVCFICSRKKKQRQKYYYGGPSLGKGSNYYNSGQHPHPNWQSGPSPNGMDHVVRMQQSPNGMGPPSGVWGAPHPLMNSGDMSGNYSMGMGPNSLPPPSPGLSLTLKGGTFTYEELASATKGFANENIIGQGGFGYVHKGILPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIYGGQRMLVYEFVPNQTLEHHLHGKGVPTMDWPTRMKIALGSAKGLAYLHEDCSPRIIHRDIKASNVLIDNSFEAKVSDFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLSEKSDVFSFGVMLLELITGKRPLDLSNAMDESLVDWARPLLNQGLEENGNFGELVDPFLEGNYNSQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLEDLKGEMMKPSGNSSVYTSSSGGSDYDTMQYNADMIKFRKAIMSSQEFSDSSELSSREMGHH. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02666 574 ProSiteProfiles Protein kinase domain profile. 233 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02666 574 FunFam proline-rich receptor-like protein kinase PERK1 211 308 - -
Seca12g02666 574 Gene3D Transferase(Phosphotransferase) domain 1 309 520 - -
Seca12g02666 574 SUPERFAMILY Protein kinase-like (PK-like) 209 506 IPR011009 -
Seca12g02666 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672|GO:0006468
Seca12g02666 574 ProSitePatterns Protein kinases ATP-binding region signature. 239 261 IPR017441 GO:0005524
Seca12g02666 574 FunFam Proline-rich receptor-like protein kinase PERK1 309 517 - -
Seca12g02666 574 Gene3D Phosphorylase Kinase; domain 1 213 308 - -
Seca12g02666 574 SMART serkin_6 233 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02666 574 MobiDBLite consensus disorder prediction 1 90 - -
Seca12g02666 574 Pfam Protein tyrosine and serine/threonine kinase 236 434 IPR001245 GO:0004672|GO:0006468
Seca12g02666 574 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 102 555 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02666 Seca-Chr12 45591384 45599136 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02666 85 563 Trihelix Transcription Factor Family AT1G70460 50.928 4.97e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca12g02666 PK_Tyr_Ser-Thr 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02666 - - gmx:100800744 781.556