Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02664 ATGTCTTCCCCTCATAACTCTTCTCCTGATGATGCCTCACCCGATGACTCCACTCCTGATAACTCCTCACCCGATAACTCAACACCCGATAATTCCGTACCTGATAAATCAGCCCCTCATAACTCCACGCCTGATGATTCCACACCTGATAATTCCACGCCTGATAACTCAAATGCATCACACAAAAGTTCATCATCGTCTCCAGTGCTGGATCAATCTCCAACACCACCAAATTCATCACATAAATCATTGTCAAATAACGGCAAGGATAATGACACCAAGGCAATAGTTGGAGGTGCGGTTGGAGTAGGGTTCGTCATTCTTATCCTAGTTATTGTTTGTTTCATTTGCTCCAGGAAGAAGAAACAAAGACAAAAGTACTATTATGGAGGCCCTTCCCTTGGAAAAGGTGACAAGTCCAACACTGCCTCCAGCACAGGGAGTAACTATTACAATAGCGGACAACACCCTCACCCTAATTGGCAATCAGGTCCGAGTCCAAATGGGATGGACCATGTCGTGAGGATGCAACAATCACCTAATGGAATGGGTCCTCCTAGTGGTGTTTGGGGTGCACCACATCCTCTAATGAATAGTGGTGACATGAGTGGCAATTACTCAATGGGGATGGGACCAAACTCTCTACCACCTCCCTCTCCAGGCCTCTCTCTTACACTCAAGGGTGGTACCTTCACATATGAGGAATTGGCTTCTGCCACCAAAGGATTTGCTAATGAAAACATTATAGGACAAGGTGGATTTGGTTATGTCCATAAAGGAATATTGCCTAATGGAAAGGAAGTGGCAGTTAAGAGTCTAAAATCAGGTAGCGGACAAGGAGAACGTGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATATTGTATTTATGGCGGGCAGAGAATGTTGGTCTATGAATTTGTTCCCAATCAAACTTTAGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAAAATTGCACTAGGATCTGCCAAAGGGCTTGCCTACCTTCATGAAGATTGCAGTCCTCGCATAATCCACCGTGATATTAAAGCTTCTAATGTCCTTATTGATAATAGCTTCGAAGCTAAGGTATCTGATTTTGGATTGGCTAAGTTAACTACTGATAATAATACACATGTCTCAACTCGCGTCATGGGAACATTCGGGTACTTGGCTCCAGAATATGCATCAAGTGGAAAATTGTCAGAGAAATCTGATGTTTTTTCATTTGGGGTAATGCTATTGGAACTGATAACTGGGAAGAGACCTTTGGATTTATCAAATGCCATGGATGAAAGCTTAGTGGATTGGGCTCGACCACTTCTAAACCAAGGGCTGGAGGAAAATGGGAACTTTGGAGAGTTGGTGGATCCATTTTTGGAGGGAAACTACAATAGTCAAGAAATGACAAGAATGGCAGCCTGTGCTGCTGCAAGCATTCGTCATTCTGCCAAGAAGCGTTCAAAAATGAGCCAGATAGTAAGAGCATTGGAAGGGGATGTTTCACTGGAAGACTTGAAAGGGGAGATGATGAAGCCTTCAGGGAATAGTAGTGTTTACACCTCATCATCAGGGGGCTCAGATTATGATACTATGCAATACAATGCTGATATGATAAAATTCAGAAAGGCAATAATGTCAAGCCAGGAATTCAGTGATAGCAGTGAGCTCTCGAGTAGAGAGATGGGCCATCATTAG 1755 0.4359 MSSPHNSSPDDASPDDSTPDNSSPDNSTPDNSVPDKSAPHNSTPDDSTPDNSTPDNSNASHKSSSSSPVLDQSPTPPNSSHKSLSNNGKDNDTKAIVGGAVGVGFVILILVIVCFICSRKKKQRQKYYYGGPSLGKGDKSNTASSTGSNYYNSGQHPHPNWQSGPSPNGMDHVVRMQQSPNGMGPPSGVWGAPHPLMNSGDMSGNYSMGMGPNSLPPPSPGLSLTLKGGTFTYEELASATKGFANENIIGQGGFGYVHKGILPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIYGGQRMLVYEFVPNQTLEHHLHGKGVPTMDWPTRMKIALGSAKGLAYLHEDCSPRIIHRDIKASNVLIDNSFEAKVSDFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLSEKSDVFSFGVMLLELITGKRPLDLSNAMDESLVDWARPLLNQGLEENGNFGELVDPFLEGNYNSQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLEDLKGEMMKPSGNSSVYTSSSGGSDYDTMQYNADMIKFRKAIMSSQEFSDSSELSSREMGHH. 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02664 584 SUPERFAMILY Protein kinase-like (PK-like) 219 516 IPR011009 -
Seca12g02664 584 ProSitePatterns Protein kinases ATP-binding region signature. 249 271 IPR017441 GO:0005524
Seca12g02664 584 MobiDBLite consensus disorder prediction 128 186 - -
Seca12g02664 584 Pfam Protein tyrosine and serine/threonine kinase 246 444 IPR001245 GO:0004672|GO:0006468
Seca12g02664 584 Gene3D Transferase(Phosphotransferase) domain 1 319 530 - -
Seca12g02664 584 SMART serkin_6 243 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02664 584 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 102 565 IPR047117 -
Seca12g02664 584 MobiDBLite consensus disorder prediction 137 184 - -
Seca12g02664 584 Gene3D Phosphorylase Kinase; domain 1 223 318 - -
Seca12g02664 584 FunFam proline-rich receptor-like protein kinase PERK1 221 318 - -
Seca12g02664 584 FunFam Proline-rich receptor-like protein kinase PERK1 319 527 - -
Seca12g02664 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 363 375 IPR008271 GO:0004672|GO:0006468
Seca12g02664 584 MobiDBLite consensus disorder prediction 1 90 - -
Seca12g02664 584 ProSiteProfiles Protein kinase domain profile. 243 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02664 Seca-Chr12 45535658 45540511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02664 85 573 Trihelix Transcription Factor Family AT1G70460 50.612 3.04e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca12g02664 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02664 - - gmx:100800744 773.467