Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02662 ATGGCATTCTGTAGTAAGGTTGGAAACCTCTTGAGGGAGAGTGCTCCTCAGAGCAGACAAGTACCTGTTGCATCCATGCTTAATTACATTCACTGCATGTATTCATCCAAGCTTTTTATTGGAGGCCTTTCATATGGAGTCGATGACCAGTCTCTTAGGGATGCATTTGCAAGCTTTGGAGATATGGTTGAGGCAAGGGTTATCACCGATAAAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCACTAATGAGTCAGCAAGTTCAGCACTATCTGCCATGGATGGACAGGATCTCAATGGGCGAAACATCCGGGTGTCCTATGCAAATGATAGACCTTTTGGACCTCGATCTCTTGGTGGTGCTTATGCTGGATGTTCAATTGGTGGTGTTGAGACAGGTGGTGATGCTATTGAATTCATTCTTCTTGGGGAAAATATTGTTCAGGTGGCCATGCCAACTGTTTTGCCTGTTACAATGGTTTTTGGTTCTGTACCAGTTATGGAAATGAGCAAGTGGTTTGACACCAACTACCATTGCATTGTTCCTGAATTGGATGCAGCAACCTATGGAGGGAACACTCAAAGCCTAGCTGGAATATCACAATAG 618 0.4417 MAFCSKVGNLLRESAPQSRQVPVASMLNYIHCMYSSKLFIGGLSYGVDDQSLRDAFASFGDMVEARVITDKDTGRSRGFGFVNFSTNESASSALSAMDGQDLNGRNIRVSYANDRPFGPRSLGGAYAGCSIGGVETGGDAIEFILLGENIVQVAMPTVLPVTMVFGSVPVMEMSKWFDTNYHCIVPELDAATYGGNTQSLAGISQ. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02662 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Seca12g02662 205 SMART rrm1_1 37 110 IPR000504 GO:0003723
Seca12g02662 205 Pfam Cobalamin-independent synthase, N-terminal domain 168 192 IPR013215 GO:0003871|GO:0008270|GO:0008652
Seca12g02662 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Seca12g02662 205 Gene3D - 22 139 IPR012677 -
Seca12g02662 205 SUPERFAMILY RNA-binding domain, RBD 35 135 IPR035979 GO:0003676
Seca12g02662 205 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 35 126 - -
Seca12g02662 205 CDD RRM2_NsCP33_like 37 112 - -
Seca12g02662 205 Gene3D - 162 200 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02662 Seca-Chr12 45498987 45499604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02662 35 116 Eukaryotic Initiation Factors Gene Family AT1G49760 41.463 8.21e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02662 - - gmx:100527220 205.297