Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02653 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCATCTCTTCCTCTGGTGGAGCTAATCAAACAGCACCACCTCCAAAACCCACCGCAAAAAAAAAGCGAAACCTTCCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTTTGGCGACGAACCGGTTCGTTTGCGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATCGAAGAGGTCACAACTTGCCTTGGAAGCTGAGGCAGAGGACGAGCAAGGAAGTGAGGAAGAGGGTCTACGTGTGTCCTGAACCATCGTGCGTTCACCACGATCCTTCTAGAGCCTTGGGAGATCTCACGGGGATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCCGTTCAATCCGATTGGAAGGCTCACTCTAAGGTTTGCGGCACCAGAGAGTACAAATGTGACTGTGGAACTGTGTTTTCAAGGAGGGATAGCTTCATCACGCATAGAGCTTTTTGTGATGCATTGGCTGAGGAGAGTGCAAGATCTCAGACTCAGAATGTTGTGAAGGCTAATTCAGAGTCTGATTCCAAGGTTTTAACGGGTGATTCATCGCCGCCGCCAGCTACCACCACCACCACCACAACCACCACTACTCAGTCAAATAGTGTCATGTCCTCTGCTTTGCAGACTCAGAACCTAGAGTTGCCTGAAAATCCCCCACAAATCATAGAGGAGCCACAAGCTGTTACAACTGCTTTAAATGGGAGCTGTAGCACCAGCACCACCAGCACAAGTTCAACAAGCAATGGTGCTGCTGCTGCTACTACTAGCAATAGTATGTTTGCAAGCTTGTTTGCTTCCTCAACAGCATCAGGGAGCCTCCAATCTCAACCACCTGCATTCACTGACCTAATTAGGGCCATGGGATGTCCAGATCGCCCTGCAGATCTCTCAGCTTCTTCATCATCTGAGGCCATATCACTATGCCTCTCAACTAATCACGGGGCATCAATCTTTGGGACAGGAGGGCAGGAGTGCCGCCAGTATGTGCCATCACCGCAGCCGGCAGCTATGTCTGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCTGCTGCCACAAATGACTCTTTGCTTCGTGGGTTAGGCATTGTGTCATCTTCAGCTTCCACTTCATCAGGGCAGCAAGATAGCCTGCAATGGGGTCAAAGGCAAGTGGAACATGATCACAATCCATCAGTTCCTGCAGGGCTTGGATTAGGGCTTCCTTGTGATAGTGGTTCTGGTCTAAAGGAATTGATGATGGGGACTCCCTCAGTTTTTGGTCCTAAGCAAACCACACTTGATTTTCTAGGATTGGGAATGGCTGCTGGTGGCAGTGCTGGTGGAGGCTTATCTGCACTCATCACATCAATTGGTGGTGGTTTGGATGTTACTGCAGCAGCTGCATCTTTTGGTAATGGAGAGTTCTCTGACAAAGATACTGGAAGGAGCTCTTGA 1551 0.4952 MPVDLDNVSTASGEASISSSGGANQTAPPPKPTAKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEESARSQTQNVVKANSESDSKVLTGDSSPPPATTTTTTTTTTQSNSVMSSALQTQNLELPENPPQIIEEPQAVTTALNGSCSTSTTSTSSTSNGAAAATTSNSMFASLFASSTASGSLQSQPPAFTDLIRAMGCPDRPADLSASSSSEAISLCLSTNHGASIFGTGGQECRQYVPSPQPAAMSATALLQKAAQMGAAATNDSLLRGLGIVSSSASTSSGQQDSLQWGQRQVEHDHNPSVPAGLGLGLPCDSGSGLKELMMGTPSVFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGGLDVTAAAASFGNGEFSDKDTGRSS. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02653 516 MobiDBLite consensus disorder prediction 406 424 - -
Seca12g02653 516 MobiDBLite consensus disorder prediction 1 47 - -
Seca12g02653 516 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Seca12g02653 516 Gene3D Classic Zinc Finger 44 110 - -
Seca12g02653 516 MobiDBLite consensus disorder prediction 406 434 - -
Seca12g02653 516 FunFam protein indeterminate-domain 12-like 43 111 - -
Seca12g02653 516 Gene3D Classic Zinc Finger 118 199 - -
Seca12g02653 516 MobiDBLite consensus disorder prediction 9 27 - -
Seca12g02653 516 MobiDBLite consensus disorder prediction 269 288 - -
Seca12g02653 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Seca12g02653 516 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Seca12g02653 516 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Seca12g02653 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 476 IPR031140 -
Seca12g02653 516 SMART c2h2final6 105 135 IPR013087 -
Seca12g02653 516 SMART c2h2final6 64 86 IPR013087 -
Seca12g02653 516 SMART c2h2final6 140 160 IPR013087 -
Seca12g02653 516 MobiDBLite consensus disorder prediction 198 241 - -
Seca12g02653 516 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02653 Seca-Chr12 45162926 45166697 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02653 1 516 IDZ Gene Family AT5G66730 57.431 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g02653 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02653 K25869 - gmx:100806404 733.791