Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02651 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTGAAGCTAGCATCTCTTCCTCTGGTGGAGGTAATCAAACAGCACCAGCTCCAAAACCGACCACCAAAAAAAAGCGAAACCTTCCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCTCCGAAAACCCTTTTGGCAACGAACCGGTTCGTGTGTGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATCGAAGAGGTCACAACTTGCCTTGGAAGCTGAGGCAGAGGACGAGCAAGGAAGTGAGGAAGAGGGTCTACGTGTGTCCTGAACCAACGTGCGTTCACCACGACCCTTCTAGAGCCTTGGGAGATCTCACGGGGATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAAAAATACGCCGTTCAATCCGATTGGAAGGCTCACTCTAAGGTTTGCGGCACCAGAGAGTACAAATGTGACTGTGGAACTGTGTTTTCAAGGAGGGATAGCTTCATCACACATAGAGCTTTTTGTGATGCATTGGCTGGGGAGAGTGCAAGATCTCAGACTGAGAATGTTGTGAAGGCTAATTCAGAGTCTGATTCGAAAGTTTTGACGGGTGATTCATCGCCGCCACCAGCTACCACCACCACAACCACCACCACCACTACTCAGTCAAATAGTGTTATGTCCTCTGCTTTGCAGACTCAGAACCTAGAGTTGCCTGAAGATCCCCTACAAATCATAGAGGACCCAAAAGCTGCTACTACTGCTTTAAATGGGAGCTGTAGCACAAGCACCACCAGCACAAGCTCAACAAGCAATGGTGGTGGTACTGCTACTACTAGCAATAGTGTGTTTGCAAGCTTGTTTGCTTCCTCAACAGCATCAGGGAGCGTGCAATCTCAACCACCAGCATTAACTGACCTAATTAGGGCCATGGGATGTCCAGATCGCCGTGCAGATCTCTCAGCTTCTTCATCATCTGAGGCCATATCTCTATGCCTCTCAACCAATCCCAGGGCATCAATCTTTGGAACAGGAGGGCAGGAGTGCCGCCAGTATGCGCCATCACCGCAGCCGGCAGCTATGTCTGCCACTGCATTACTGCAGAAAGCTGCTCAAATGGGTGCTGCTGCCACAAATGCCTCTTTGTTTCGTGGGTTAGGCATTGTGTCATCTTCAGCTTCCACTTCATCAGGCCAGCAGGATAGCCTGCAATGGGGTCAAAGGCAAGTGGAACATGATCACAATGCATCAGTTCCTGCAGGGCTTGGACTAGGGCTTCCTTGTGATGGTGGTTCTGGTCTAAAGGAATTGATGATGGGGACTCCCTCAGTGTTTGGTCCTAAGCAAACCACACTTGATTTTCTAGGATTGGGAATGGCTGTTGGTGGCAGTGCTGGTGGAGGCTTATCTGCACTCATCACATCAATCGGTGGTGGTTTGGATGTTACTGCAGCAGCTGCATCTTTTGGTAATGGAGAGTTCTCTGGCAAAGATATTGGAAGGAGCTCTTGA 1557 0.4945 MPVDLDNVSTASGEAEASISSSGGGNQTAPAPKPTTKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAGESARSQTENVVKANSESDSKVLTGDSSPPPATTTTTTTTTTQSNSVMSSALQTQNLELPEDPLQIIEDPKAATTALNGSCSTSTTSTSSTSNGGGTATTSNSVFASLFASSTASGSVQSQPPALTDLIRAMGCPDRRADLSASSSSEAISLCLSTNPRASIFGTGGQECRQYAPSPQPAAMSATALLQKAAQMGAAATNASLFRGLGIVSSSASTSSGQQDSLQWGQRQVEHDHNASVPAGLGLGLPCDGGSGLKELMMGTPSVFGPKQTTLDFLGLGMAVGGSAGGGLSALITSIGGGLDVTAAAASFGNGEFSGKDIGRSS. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02651 518 MobiDBLite consensus disorder prediction 270 291 - -
Seca12g02651 518 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Seca12g02651 518 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Seca12g02651 518 MobiDBLite consensus disorder prediction 1 49 - -
Seca12g02651 518 FunFam protein indeterminate-domain 12-like 45 113 - -
Seca12g02651 518 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Seca12g02651 518 Gene3D Classic Zinc Finger 46 112 - -
Seca12g02651 518 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 478 IPR031140 -
Seca12g02651 518 MobiDBLite consensus disorder prediction 200 243 - -
Seca12g02651 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Seca12g02651 518 Gene3D Classic Zinc Finger 120 198 - -
Seca12g02651 518 SMART c2h2final6 142 162 IPR013087 -
Seca12g02651 518 SMART c2h2final6 107 137 IPR013087 -
Seca12g02651 518 SMART c2h2final6 66 88 IPR013087 -
Seca12g02651 518 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Seca12g02651 518 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02651 Seca-Chr12 44982281 44985427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02651 1 518 IDZ Gene Family AT5G66730 57.770 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g02651 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02651 K25869 - gmx:100806404 727.243