Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02648 ATGAGAGTTCCCGTTCCCTCATCTCCACAGGCCAACCCAAAACTCACCACCCCAAACACTGTCCTCCACACCACTCCCAACATCATCAACAACAATAACAGTAATAATCTAACTTTGTGCTACGAGCCCACCTCCGTGCTCGATCTCTGCCGTAGTCCCAGCCCTGAAAAGAAAACCACCGTTGTCCCCAAGCCAGAACCTGAAGATCAACAAATAGAGCTGGATGATCATGTGTTGCCTAATTTGGACTGGTGGGAATCCATTATGAAGGACTTGGGCTTACAAGACGACTCCACCACTCCCCTTTTGAAAACCAACACTGAAAATCTCAATTCTAACCCATGCATCCCTGAAATTTACCCAAACCCTTCTCAGGACCCATCCTTTGATCACCCTCCAGACTTCACCACTCTCTCAGATATTTACTCCAATCAAAACCTGGCCTACAACTACACCAACAATTTGGACCATTTGGTTCATGACTTCAATCCCTCCCACCACAACAACACCAATAACAACAATAGAAATTGGGATTTCATAGAGGAGCTTATCCGTGCGGCTGATTGCTTTGACAGTAACCACCTTCAACTCGCTCAAGCGATATTGGAGCGGCTCAATCAACGGCTACGATCACCTCTGGGAAAACCGCTCCATAGAGCAGCGTTTCACTTCAAAGACGCTCTCCAGTCTCTCCTCTCCGGTTCGAACCGGACCAACGCGCCGCGACTTTCTTCCATGGTGGAGATCGTGCAAACCATTAGAACCTTCAAGGCCTTTTCGGGGATTTCACCGATTCCAATGTTCTCTATCTTCACCACCAACCAAGCTCTCCTTGAAGCCCTCCATGGCTCCTCCTTCATGCATGTTGTTGACTTCGAAATCGGACTCGGAATCCAATACGCTTCTCTCATGAAAGAGATCGCCGAGAAGGCAGGAAATAATAACTCATCGCCGCTCCTCCGTATCACCGCCGTCGTGCCTGAAGAGTACGCTGTCGAGAGCCGCCTTATAAGGGAGAATCTCAACCAGTTCGCGCAAGAACTCGGGATCCGTGTGCAGATCGACTTTGTGCCGCTTCGGACTTTCGAGACGGTGTCGTTTAAGGCCGTCAGGTTCGTCGATGGTGAGAGGATGGCCGTTTTGTTGTCGCCGGCGATTTTCTGCCGCCTCAGCGCCGGCGCCGGCGGTGGAAGCGGTAGCATCGCAGCGTTTCTGGCGGACGTGCGGAGGATTTCTCCCGGCGTGGTGGTGTTCGTCGACGGCGAGGGATGGACGGAGGCGGCGGCTGCGTCGTCGTTTCGCCGCGGTGTAGTGAATAGCCTGGAGTTCTACTCGATGATGCTGGAGTCGCTGGATGCGTCGGTGGTTTCCGGGGGAGGGGGAGATTGGGCGAGGAGGATCGAGATGCTTCTTCTGCGGCCGAAGATCTTTGCAGCGGTGGAAGCCGCAGGGAGAAGGACGCCGCCGTGGCGGGAGGCGTTTTACGGTGCCGGAATGAGGTCGGTGCAGTTGAGCCAGTTCGCGGATTTTCAGGCGGAGTGCTTGTTGGCGAAGGTGCAAATCAGGGGCTTCCACGTGGCAAAACGACAAGCTGAGTTGGTGCTCTTCTGGCATGAGCGGGCCATGGTTGCCACGTCAGCTTGGCGTTGTTAG 1653 0.536 MRVPVPSSPQANPKLTTPNTVLHTTPNIINNNNSNNLTLCYEPTSVLDLCRSPSPEKKTTVVPKPEPEDQQIELDDHVLPNLDWWESIMKDLGLQDDSTTPLLKTNTENLNSNPCIPEIYPNPSQDPSFDHPPDFTTLSDIYSNQNLAYNYTNNLDHLVHDFNPSHHNNTNNNNRNWDFIEELIRAADCFDSNHLQLAQAILERLNQRLRSPLGKPLHRAAFHFKDALQSLLSGSNRTNAPRLSSMVEIVQTIRTFKAFSGISPIPMFSIFTTNQALLEALHGSSFMHVVDFEIGLGIQYASLMKEIAEKAGNNNSSPLLRITAVVPEEYAVESRLIRENLNQFAQELGIRVQIDFVPLRTFETVSFKAVRFVDGERMAVLLSPAIFCRLSAGAGGGSGSIAAFLADVRRISPGVVVFVDGEGWTEAAAASSFRRGVVNSLEFYSMMLESLDASVVSGGGGDWARRIEMLLLRPKIFAAVEAAGRRTPPWREAFYGAGMRSVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02648 550 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 168 544 IPR005202 -
Seca12g02648 550 MobiDBLite consensus disorder prediction 9 28 - -
Seca12g02648 550 MobiDBLite consensus disorder prediction 1 28 - -
Seca12g02648 550 ProSiteProfiles GRAS family profile. 170 549 IPR005202 -
Seca12g02648 550 Pfam GRAS domain family 180 549 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02648 Seca-Chr12 44914286 44915938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02648 71 549 GRAS Transcription Factor Family AT4G36710 55.804 9.39e-169 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca12g02648 GRAS 2.6e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02648 - - cam:101510420 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02648 12 44914286 44915938 Seca12g02648 12 44914286 44915938 ECH
Seca12g02648 12 44914286 44915938 Seca12g02648 12 44914286 44915938 PCT