Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02647 ATGGGTACTGGTGAAGAGAACACAGCTAAACCTTCTAAATCATCTTCATCAACTCAGGAGATACCAACAGCACCATCATATCCAGATTGGTCAAACTCCATGCAGGCCTATTATGCTCCTGGAGCCGCTCCACCTCCCTTTTTTGCCTCAACTGTTGCTTCCCCAACTCCCCATCCCTATTTGTGGGGAGGCCAGCACCCCTTAATGCCACCATATGGGACTCCAGTCCCATACCCAGCTTTATACCCTCCTGGGAATATCTATGCTCATCCTAGCATGGCAGGGACTCCAAGTGCTATCCAGCAAAGTTCAGAGATTGAAGGAAAGGGACTTGATGGAAAAGATCGGGATTCATCCAAAAAAATAAAAGGAACTTCTGCAAATACATATGCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCATTTCACAAAGCGCTGAAAGTGGTTCAGAGGGTTCATCAAATGCTAGTGATGAGAATACTAACCAACAGGAATCAGCTTCAAACAAGAAGGGAAGCTTTGACCAAATGCTTGTTGATGGTTGGTGTTTCCATGAAATTTTTTCAGGAGCCAATGCACAGAACAATTCTGCCGGTGCCATTTCTCAATCCCCTGTGCCTGCAACTAATCTTAATATTGGAATGGACTTATGGAATGCATCTCCTGCTGGTGCTGAAGCTGCAAAAATGAGACATAATCAATCTGGTGCCCCTGGAGCTGTTGCTATGGGTCGTGAAGTTGTACTTGAGGATGAACGTGAGCTGAAAAGACAAAAGAGAAAACAATCTAACAGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAATGTGAAGAGTTACAAAAGAGGGTGGAGACACTGGGAAATGAGAATCAAACTCTCAAAGAAGAGCTTCAGAAACTTTCCGAAGAATGTGAGAAGCTTACATCTGAAAATAATTCTATCAAGGAAGAGTTGGAACGGTTGTGTGGGCCAGAAGCAGTTTCTAACCTTGGATGA 1023 0.4497 MGTGEENTAKPSKSSSSTQEIPTAPSYPDWSNSMQAYYAPGAAPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPALYPPGNIYAHPSMAGTPSAIQQSSEIEGKGLDGKDRDSSKKIKGTSANTYAKAGESGKAGSGSGNDGISQSAESGSEGSSNASDENTNQQESASNKKGSFDQMLVDGWCFHEIFSGANAQNNSAGAISQSPVPATNLNIGMDLWNASPAGAEAAKMRHNQSGAPGAVAMGREVVLEDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVETLGNENQTLKEELQKLSEECEKLTSENNSIKEELERLCGPEAVSNLG. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02647 340 Coils Coil 271 326 - -
Seca12g02647 340 MobiDBLite consensus disorder prediction 1 29 - -
Seca12g02647 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 260 323 IPR004827 GO:0003700|GO:0006355
Seca12g02647 340 SMART brlzneu 258 322 IPR004827 GO:0003700|GO:0006355
Seca12g02647 340 MobiDBLite consensus disorder prediction 70 84 - -
Seca12g02647 340 Pfam G-box binding protein MFMR 1 93 IPR012900 -
Seca12g02647 340 SUPERFAMILY Leucine zipper domain 261 317 IPR046347 GO:0003700|GO:0006355
Seca12g02647 340 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 265 280 IPR004827 GO:0003700|GO:0006355
Seca12g02647 340 Pfam bZIP transcription factor 258 320 IPR004827 GO:0003700|GO:0006355
Seca12g02647 340 CDD bZIP_plant_GBF1 263 313 IPR045314 GO:0003700|GO:0006355
Seca12g02647 340 MobiDBLite consensus disorder prediction 258 283 - -
Seca12g02647 340 MobiDBLite consensus disorder prediction 47 179 - -
Seca12g02647 340 MobiDBLite consensus disorder prediction 142 179 - -
Seca12g02647 340 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 336 IPR044827 GO:0003700|GO:0006355|GO:0043565
Seca12g02647 340 Gene3D - 261 315 - -
Seca12g02647 340 MobiDBLite consensus disorder prediction 108 122 - -
Seca12g02647 340 FunFam BZIP transcription factor 260 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02647 Seca-Chr12 44903799 44910096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02647 1 339 bZIP Transcription Factor Family AT4G36730 53.666 2.84e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca12g02647 MFMR 7.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02647 K09060 - gmx:778191 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02647 12 44903799 44910096 Seca12g02647 12 44903799 44910096 ECH