Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02645 ATGGAAGCGCAGTCTTGTTTGTTGTCTCTAACTCCAAAAGCATTTCACCCTTTCAAGTATAGAACATCGATCTCACTCGCCATATATACCACCATGAATCATGTACCTATCGATGACAATATGATGCTCTTCTCTCAACTATATCCTCCAGGTGCTTTCACTCAAATAACTCCTCAACAAGGGGAGAAAAAGCCACGACGCAAGCGAAGTAAAAAGAACAAATTAGGAGGAGAAAATGGTGGTACTGCGGGGGTGATGAAGAAGAGAAAGCTAAGTGAAGAGCAAGTTAATCTTCTTGAGCAAAGCTTCATCAATGAACATAAGCTTGAGTCTGAAAGGAAAGACCGGCTCGCAATGGAGCTTGGTTTGGATCCTCGACAAGTTGCAGTGTGGTTTCAAAATAGAAGATCTCGTTGGAAGAACAAAAAATTGGAGGAAGAGTACTCCAATCTTAAAAATGTCCATGAAACCACTGTGCTCCAGAAATGCAACCTTGAGACCGAGGTAGTGTTGAAGCTCGAGGAACAACTTTTAGAGGCAAAGAAGGAGATTCAGAGACTTCAAGAACGTGGTGGTAGAACCTCAAGCAACAGCTCCAGTTTCTCACAGTCACAATCAATGGAAGCTGTGAACCCACCATTTCTTGGAGGAGAATTTAGGATGGAAGAATATGATGATGGTGATGTGTCTTATATTCCGGAAACAGATTATATATTCAATGGGATGGAATGGTTTAATCTGTATATGTGA 750 0.4147 MEAQSCLLSLTPKAFHPFKYRTSISLAIYTTMNHVPIDDNMMLFSQLYPPGAFTQITPQQGEKKPRRKRSKKNKLGGENGGTAGVMKKRKLSEEQVNLLEQSFINEHKLESERKDRLAMELGLDPRQVAVWFQNRRSRWKNKKLEEEYSNLKNVHETTVLQKCNLETEVVLKLEEQLLEAKKEIQRLQERGGRTSSNSSSFSQSQSMEAVNPPFLGGEFRMEEYDDGDVSYIPETDYIFNGMEWFNLYM. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02645 249 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Seca12g02645 249 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Seca12g02645 249 SMART HOX_1 85 146 IPR001356 GO:0003677
Seca12g02645 249 SUPERFAMILY Homeodomain-like 87 150 IPR009057 -
Seca12g02645 249 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Seca12g02645 249 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Seca12g02645 249 CDD homeodomain 87 143 IPR001356 GO:0003677
Seca12g02645 249 Coils Coil 163 190 - -
Seca12g02645 249 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Seca12g02645 249 Coils Coil 134 161 - -
Seca12g02645 249 Gene3D - 80 150 - -
Seca12g02645 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 71 204 IPR045224 GO:0003700
Seca12g02645 249 MobiDBLite consensus disorder prediction 54 84 - -
Seca12g02645 249 MobiDBLite consensus disorder prediction 187 208 - -
Seca12g02645 249 MobiDBLite consensus disorder prediction 190 208 - -
Seca12g02645 249 FunFam homeobox-leucine zipper protein ATHB-40 81 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02645 Seca-Chr12 44792375 44793984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02645 32 249 Homeobox Transcription Factor Family AT4G36740 54.464 2.62e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca12g02645 Homeodomain 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02645 K09338 - gmx:100803948 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g02645 12 44792375 44793984 Seca12g02645 12 44792375 44793984 ECH
Seca12g02645 12 44792375 44793984 Seca12g02645 12 44792375 44793984 PCT