Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g02628 ATGTCTTCCTTCTTCCTTCCCTCTCATACACTATTTCTTGCACTCATGTTCTTTTCCACCACCCATCTCCTATCTCAATTTCCCCAGGCCAATGGAAGAAAAACAAACTTTTCATGCCCTATGGATTCACCTCCTTCCTGTGATACATATGTGGCATACTTTGCTCAGTCACCAAATTTTTTGACCCTGATAAGTATATCTGATATATTTGACACCAGTCCTCTATCCATTGCAAGAGCAAGTAACATGAACAATGAGTATGACAAGCTTATTCCAGGCCAACTCTTGTTGGTACCTGTATCTTGTGGTTGCAGTGGAAACCACTCTTTTGCTAATATCTCATACGTCATCAAGCAAGGTGAAAGCTACTACTATCTTTCAACCACTTCCTATGAGAATCTCACCAATTGGCAAACAGTGGAAGATTCAAACCCTCACCTAAATCCATATTTGTTACCAGTAGGCACCAAAGTAGTGATCCCTTTGTTCTGTAGGTGCCCTTCAAACAACCAGTTGGAGAAAGGGATAGAGTATCTTATTACTTATGTGTGGCAGCTAAATGACAACGTTTCCTCTGTAGCTGCAAAGTTTGGTGCATCACCAGGGGACATAATGACTGAAAACTACTTCGGCCACAACTTCACTGCTGCAACAAACCATCCTGTTTTTATCCCAGTAACACAATTACCAGCTCTTTCTCAATCTTATTCTTCACTTGAAAGAAAGAGGATAAATCATCTTCCTATTATCATTGCCATTGGTATGAGCCTGGGATGCACTTTTTTTATTGCAGTTACATTACTGGCTTATGTATATTATCTGAGGAAGAGGAAGGGTAGTGAGAATAGGAGTATGGCATCTGTGGAGACTGCAGATAAGTTAATTTCTGGAGTTTCAGGCTATGTAAGTAAGCCAACTGTATATGAAGTTGGTATGATTATGGAAGCTACCATGAACCTTAATGAACAGTGCAGGATTGGAGAATCAGTGTACAAGGCCAAAATGGATGGTCAGATTTTAGCTGTGAAAAAAGTCAAGGAAGATGTCACAGAGGAGGTGATGATTCTGCATAAGGTAAATCATGCAAATCTAGTGAAACTAATAGGTGTCTCTTCAGGATATGATGAAAATCACTTCCTTGTTTATGAATATGCTGAAAATGGATCTCTTCATGACTGGTTGTTCTCCAAGTCTTCAACTGTTTCAAGCTCAGTGTCATTGGCTTTCCTCACATGGAGTCAGAGGATAAGTATAGCTATTGATGTTGCCATGGGTCTGCAATACTTGCATGAACACACTGAACCAAGTATAGTCCACAGGGACATCACATCAAGTAATATCCTTCTTGACTCAAACTTTAAGGCCAAGATAGCAAATTTTTCTTTGGCCAGAACTTCAATGAATCCTATGATAAAAAAAGTTGATGTCTTTGCTTATGGAGTGGTTCTGTTGGAGTTACTGACAGGCAAGAAATCCTTCATAAACAATGAAAATGGTGAGGTGACTATGTTGTGGAAAGATATTAGGGGTATCTTTGATGTAGAAGATAAGAGAAAAGAAAGGCTTAGAAGATGGATGGATCCTAAGCTTGGGGGATTTTATCCTCTTGATGATGCTCTCAGCTTGGCCTCCTTGGCAGTGAATTGCACAGCAGAGAAGTCTTTGTCCAGACCAACCATGGGAGAAGTTGTTCTTAGCCTCTCCCTTCTCACTCAACACTCTCCTACCACAATAGAGAGATCATGGAATTATGGGATAGATGTAGATGTTACTGAAATGGTTATTCCCATCGTAGCTCGCTGA 1803 0.4021 MSSFFLPSHTLFLALMFFSTTHLLSQFPQANGRKTNFSCPMDSPPSCDTYVAYFAQSPNFLTLISISDIFDTSPLSIARASNMNNEYDKLIPGQLLLVPVSCGCSGNHSFANISYVIKQGESYYYLSTTSYENLTNWQTVEDSNPHLNPYLLPVGTKVVIPLFCRCPSNNQLEKGIEYLITYVWQLNDNVSSVAAKFGASPGDIMTENYFGHNFTAATNHPVFIPVTQLPALSQSYSSLERKRINHLPIIIAIGMSLGCTFFIAVTLLAYVYYLRKRKGSENRSMASVETADKLISGVSGYVSKPTVYEVGMIMEATMNLNEQCRIGESVYKAKMDGQILAVKKVKEDVTEEVMILHKVNHANLVKLIGVSSGYDENHFLVYEYAENGSLHDWLFSKSSTVSSSVSLAFLTWSQRISIAIDVAMGLQYLHEHTEPSIVHRDITSSNILLDSNFKAKIANFSLARTSMNPMIKKVDVFAYGVVLLELLTGKKSFINNENGEVTMLWKDIRGIFDVEDKRKERLRRWMDPKLGGFYPLDDALSLASLAVNCTAEKSLSRPTMGEVVLSLSLLTQHSPTTIERSWNYGIDVDVTEMVIPIVAR. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g02628 600 Pfam Protein tyrosine and serine/threonine kinase 343 467 IPR001245 GO:0004672|GO:0006468
Seca12g02628 600 Coils Coil 599 600 - -
Seca12g02628 600 ProSiteProfiles Protein kinase domain profile. 288 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g02628 600 Gene3D Phosphorylase Kinase; domain 1 296 384 - -
Seca12g02628 600 ProSitePatterns Tyrosine protein kinases specific active-site signature. 437 449 IPR008266 GO:0004672|GO:0006468
Seca12g02628 600 Gene3D Transferase(Phosphotransferase) domain 1 385 467 - -
Seca12g02628 600 Gene3D Transferase(Phosphotransferase) domain 1 468 586 - -
Seca12g02628 600 Pfam LysM domain 62 99 IPR018392 -
Seca12g02628 600 Pfam LysM domain 115 161 IPR018392 -
Seca12g02628 600 SUPERFAMILY Protein kinase-like (PK-like) 322 568 IPR011009 -
Seca12g02628 600 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 12 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g02628 Seca-Chr12 43952462 43954264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g02628 81 570 Receptor kinase-like Gene Family AT3G21630 29.760 1.06e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca12g02628 PK_Tyr_Ser-Thr 3.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g02628 - - vra:106777834 741.11